Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7p05
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|... 231 7e-62
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar... 30 0.35
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 27 1.9
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 27 1.9
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S... 27 1.9
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 26 5.7
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 10.0
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 10.0
>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 401
Score = 231 bits (565), Expect = 7e-62
Identities = 105/169 (62%), Positives = 134/169 (79%)
Frame = +1
Query: 169 TWQEKKHLITRNLQEVLGDDKLTEILKQRDLKIYWGTATTGRPHVAYFVPMLKIADFLKA 348
T EK LITRNLQEVLG + EIL +RD+ +YWG+A TGRPH YFVPM+K+ADFLKA
Sbjct: 4 TPDEKYELITRNLQEVLGAKMIREILNERDISLYWGSAPTGRPHCGYFVPMMKLADFLKA 63
Query: 349 GCEVTILFADLHAYLDNMKAPWELLALRTQYYEAAIKAMLTSIGVPLEKLKFVRGTEYQL 528
G VT+L AD+HA+LDNMKAP EL+ R +YYE +K++L S+ +P+EKL+FV G+ YQL
Sbjct: 64 GVHVTVLLADVHAFLDNMKAPMELVQHRVRYYEIIVKSILKSLNIPIEKLRFVIGSSYQL 123
Query: 529 SKEYTLDVYRLSSVVTEHDAKKAGAEVVKQVEHPLLSGLLYPNLQALDE 675
++YTLD +RL++ TEH A++AGAEVVKQV PLLS L+YP +QALDE
Sbjct: 124 KEDYTLDNFRLAASTTEHTARRAGAEVVKQVASPLLSSLIYPGMQALDE 172
>SPAC23A1.04c |mnl1||alpha mannosidase-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 29.9 bits (64), Expect = 0.35
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 415 ELLALRTQYYEAAIKAMLTSIGVPLEKLKFVRGTEYQ 525
ELL L T+ E + A T G+P ++ ++G Y+
Sbjct: 161 ELLTLATELAERLLPAFRTPTGIPFARINLMKGVAYR 197
>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 425
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 505 VRGTEYQLSKEYTLDVYRLSSVVTEHDAKKAGAEVVKQVEHPLL 636
+RG E+ + YT D+ + S++ T D +A K+V P +
Sbjct: 155 LRGREFMMKDLYTFDIDKASAMKTYEDVLQAYHTFFKEVGLPFV 198
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 27.5 bits (58), Expect = 1.9
Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 11/156 (7%)
Frame = +1
Query: 148 LHKLTMATWQEKKHLITRNLQEVLGDDKLTEILKQRDLKIYWGTATTGRPHVAYFV--PM 321
L ++A+ QE+ LQ + +K++EIL +++ T P V P+
Sbjct: 379 LSNSSIASIQEEASHPLIKLQTHIICNKISEILSSAHIQLE-AIRTGNAPESGDLVTPPL 437
Query: 322 LKIAD----FLK-AGCEVTILFAD--LHAYLDNMKAPWE--LLALRTQYYEAAIKAMLTS 474
L+I FLK +G V +D + AY++ + + + L+ L QY ++ S
Sbjct: 438 LRILTHIILFLKISGLAVDEYTSDSIIQAYIELLASAKKVNLVPLYIQYLSNQVQYEAYS 497
Query: 475 IGVPLEKLKFVRGTEYQLSKEYTLDVYRLSSVVTEH 582
+ L + R + QL+K+Y+LD+ + + E+
Sbjct: 498 RFLILVDEESARSEQLQLAKKYSLDINHAALLAVEY 533
>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
Trp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 354
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/63 (23%), Positives = 30/63 (47%)
Frame = +1
Query: 424 ALRTQYYEAAIKAMLTSIGVPLEKLKFVRGTEYQLSKEYTLDVYRLSSVVTEHDAKKAGA 603
A+ + YEAA++A+LT P+E F+ ++E + + ++ + A
Sbjct: 22 AIPLENYEAALRAILTGKASPVETASFLASLHLTKAEEVPDILMQTVQILKSYSTPIANI 81
Query: 604 EVV 612
E+V
Sbjct: 82 EMV 84
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.8 bits (54), Expect = 5.7
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 223 DDKLTEILKQRDLKIYWGTATTGRPHVAYFVPMLKIADF-LKAGCEVTILFADLHAYLDN 399
D +L E Q+D+ + W A R + +P L+ + L G E+ + Y
Sbjct: 238 DKRLKESQTQKDVVVRWDQAINKRYTAWFLLPKLESGEIRLAIGDEMKL------TYEGE 291
Query: 400 MKAPW 414
++APW
Sbjct: 292 LRAPW 296
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 25.0 bits (52), Expect = 10.0
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +1
Query: 166 ATWQEKKH---LITRNLQEVLGDDKLTEILKQRDLKIYW 273
+TWQ+KKH T + + + KLT I+ IYW
Sbjct: 62 STWQKKKHDDLTATVPVIDFRKNQKLTSIVVNAIQAIYW 100
>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 25.0 bits (52), Expect = 10.0
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 133 NK*KDLHKLTMATWQEKKHLITRNLQEVLG--DDKLTEILKQRDLKIYWGTA 282
N+ +LH QE++HL + L+E + + KL +L RD K W +A
Sbjct: 230 NEANELHGKLSKIQQEQEHLFEQRLREKVSEMESKLEALLIARDEK--WQSA 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,252
Number of Sequences: 5004
Number of extensions: 52269
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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