Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7p05
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0180 + 13912769-13913008,13914723-13915006,13915118-139152...    42   6e-04
08_01_0325 + 2917942-2918193,2919057-2919340,2919453-2919549,291...    42   6e-04
06_01_0238 + 1815258-1815581,1816286-1816530,1816612-1816765,181...    32   0.48 
10_07_0178 - 13856391-13856458,13857231-13858211,13858848-13859175     30   1.5  
11_06_0338 + 22479804-22480651,22480764-22482954                       28   5.9  
10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301     28   5.9  
09_01_0073 - 1057560-1058043,1058199-1058385,1058754-1059062,105...    28   5.9  

>08_02_0180 +
           13912769-13913008,13914723-13915006,13915118-13915214,
           13915358-13915393,13916665-13916810,13917002-13917107,
           13917358-13917417,13917787-13917876
          Length = 352

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
 Frame = +1

Query: 175 QEKKHLITRNLQEVLGDDKLTEILKQRDLKI-YWGTATTGRPHVAY-FVPMLKIADFLKA 348
           Q++  L+    +E + +D+L  +L+++ + I Y G   +GR H+A   V  + +   ++A
Sbjct: 35  QDRFELLRGIGEECIQEDELMNLLQKKPVPICYDGFEPSGRMHIAQGIVKTINVNKMVRA 94

Query: 349 GCEVTILFADLHAYLDN 399
           GC+V I  AD  A L+N
Sbjct: 95  GCKVKIWIADWFAQLNN 111


>08_01_0325 +
           2917942-2918193,2919057-2919340,2919453-2919549,
           2919677-2919712,2920570-2920715,2920882-2920987,
           2921160-2921219,2921848-2921898
          Length = 343

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
 Frame = +1

Query: 175 QEKKHLITRNLQEVLGDDKLTEILKQRDLKI-YWGTATTGRPHVAY-FVPMLKIADFLKA 348
           Q++  L+    +E + +D+L  +L+++ + I Y G   +GR H+A   V  + +   ++A
Sbjct: 39  QDRFELLRGIGEECIQEDELMNLLQKKPVPICYDGFEPSGRMHIAQGIVKTINVNKMVRA 98

Query: 349 GCEVTILFADLHAYLDN 399
           GC+V I  AD  A L+N
Sbjct: 99  GCKVKIWIADWFAQLNN 115


>06_01_0238 +
           1815258-1815581,1816286-1816530,1816612-1816765,
           1817043-1817257,1817351-1817468,1817685-1817895,
           1818133-1818194,1818306-1818524
          Length = 515

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
 Frame = +1

Query: 220 GDDKLTEILKQRDLKIYW---GTATTGRPHVAYFVPMLKIADF-LKAGCEVTILFADLHA 387
           GD K  E+L+    K+ W       TG P   Y    LK  D  +    +V +  A +  
Sbjct: 353 GDVKFAEVLEMMGAKVTWTDTSVTVTGPPREPYGKKHLKAVDVNMNKMPDVAMTLAVVAL 412

Query: 388 YLDNMKAPWELLALRTQYYE--AAIKAMLTSIGVPLEK 495
           + D   A  ++ + R +  E   AI+  LT +G  +E+
Sbjct: 413 FADGPTAIRDVASWRVKETERMVAIRTELTKLGASVEE 450


>10_07_0178 - 13856391-13856458,13857231-13858211,13858848-13859175
          Length = 458

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +1

Query: 142 KDLHKLTMATWQEKKHLITRNL 207
           K++ KLT+ +W+E+K +IT N+
Sbjct: 425 KEIEKLTLTSWKEEKEIITLNV 446


>11_06_0338 + 22479804-22480651,22480764-22482954
          Length = 1012

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
 Frame = +1

Query: 154 KLTMATWQEKKHLITRNLQEVLGDDK----LTEILKQRDLKIYWG 276
           ++TM+  ++   L+TRN+ E L D +    + +IL + DL+I  G
Sbjct: 258 EITMSMLEDNPELLTRNISEHLKDKRYFVLIDDILDESDLEIIKG 302


>10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301
          Length = 1116

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 142 KDLHKLTMATWQEKKHLITRNLQEVLGD 225
           K++ KLT+ +W+E  H I  N  EV  D
Sbjct: 425 KEIEKLTLTSWKEIVHTIDDNKAEVSTD 452


>09_01_0073 -
           1057560-1058043,1058199-1058385,1058754-1059062,
           1059427-1060269,1061572-1062552,1063189-1063516
          Length = 1043

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 142 KDLHKLTMATWQEKKHLITRNLQEVLGD 225
           K++ KLT+ +W+E  H I  N  EV  D
Sbjct: 425 KEIEKLTLTSWKEIVHTIDDNKAEVSTD 452


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,137,704
Number of Sequences: 37544
Number of extensions: 279817
Number of successful extensions: 651
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)