Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7o21
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...   204   6e-54
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.7  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   3.6  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    26   4.8  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    26   4.8  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    26   4.8  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    26   4.8  
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    25   6.3  
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    25   8.4  
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    25   8.4  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   8.4  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   8.4  

>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score =  204 bits (499), Expect = 6e-54
 Identities = 90/139 (64%), Positives = 112/139 (80%)
 Frame = +2

Query: 179 VTVVLGAQWGDEGKGKVVDLLAVDSDIVCRCQGGNNAGHTVVVDGKEFDFHLLPSGIINQ 358
           +TVVLG+QWGDEGKGK+VD+L  + D+  RCQGGNNAGHT+V +G  +DFH+LPSG++N 
Sbjct: 16  ITVVLGSQWGDEGKGKLVDILCDNVDVCARCQGGNNAGHTIVANGVTYDFHILPSGLVNP 75

Query: 359 KCTSVIGNGVVIHLPGLFEELKKNELKGMKGCEGRLVISDRAHLVFDIHQQVDGLQEAEK 538
           KC ++IG+GVV++LP  F EL+K E KG+K C  R+ ISDRAHLVFD HQ+ D L EAE 
Sbjct: 76  KCQNLIGSGVVVYLPAFFSELEKLEQKGLK-CRDRIFISDRAHLVFDYHQRADALNEAEL 134

Query: 539 GKNSLGTTKKGIGPAYSAK 595
           GK S+GTT KGIGPAYS K
Sbjct: 135 GKQSIGTTGKGIGPAYSTK 153


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 360  FWLMMPLGNRWKSNSLPSTTTVCPAL 283
            F ++MP  N +K  SLP   T  PAL
Sbjct: 1193 FSVVMPSANAYKKRSLPIKATANPAL 1218


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 38   YGKNLREPLNFRFYS*IMVTTVNSINTEINGELSRSCPSKKTKMEN 175
            YGK L E  +   Y  +   T+ +I   +N       PS+KT ++N
Sbjct: 921  YGKFLEELKSSDLYKIVFRDTLQAILDIMNNNAETLSPSEKTNLKN 966


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 336 NRWKSNSLPSTTTVCPALF--PP*QRQTMSESTASKSTTFPLP 214
           NRW ++ +PS + + P+ F  P       S S ASK   +  P
Sbjct: 23  NRWSTSHIPSLSEINPSSFQSPSPSPFASSTSLASKPARYSKP 65


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
 Frame = +2

Query: 347 IINQKCTSVIGNGVVIHLPGLFEELKKNELKG---MKGCEGRLVISDRAHLVFDIHQQVD 517
           I+++   S+    VVI   G   EL+ NE+     +K  EG ++ +D   +  D+H QVD
Sbjct: 166 IVDELKKSLALKAVVIR-EGQVHELEANEVVPGDILKLDEGTIICADGRVVTPDVHLQVD 224

Query: 518 GLQEAEKGKNSLGTTKKGIGPAYSA 592
             Q A  G+ SL   K    P +++
Sbjct: 225 --QSAITGE-SLAVDKHYGDPTFAS 246


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 404 GLFEELKKNELKGMKGCEGRLVI-SDRAHLV 493
           G FEE  K+ L  ++G EG++++  D  HL+
Sbjct: 186 GDFEERLKSVLSDLEGAEGKVILFVDEMHLL 216


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 470 SRVCLRNPSCLSARSSSAPQTVRAGGSP 387
           S +  +NP+  S  SS+ P  V  GGSP
Sbjct: 87  SELTSKNPTVSSTTSSANPAIVSNGGSP 114


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 168 WKTK*LLFWVLSGAMRAKEKL*IYLRWIP-TLFAVVR 275
           W+T   L  +LS  + AK    I++ WIP +LF +V+
Sbjct: 240 WRTFFFLCCLLSPLLTAKLPAAIFMYWIPSSLFNIVQ 276


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 134 LSRSCPSKKTKMENKVTVVLGAQWG 208
           L+ S P  K+ +  K  VVLG+ WG
Sbjct: 77  LNNSSPKGKSGVPKKNIVVLGSGWG 101


>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -1

Query: 527 PGDRRPVDVYRKQDEPCPRSRVCLRNPSCLSARSSSAPQTVRAGGSPRHYL*QTC 363
           P  + PVDV ++     P  ++C R+ +C    S S+ + V     P   L   C
Sbjct: 191 PKVKGPVDVEKQCGVLLPNGQMCARSLTC-KTHSMSSKRAVPGRSQPYDVLLAAC 244


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 268 TANNVGIHRK*IYNFSFALIAPLSTQNNSYFV 173
           T NNVG  R+ IY F+  +  P S  ++S F+
Sbjct: 156 TVNNVGSRRQSIYEFNIGI--PSSNIDSSQFL 185


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 520 TVDLLMYIENKMSPVRDHESAFA 452
           TVD   YI N  S +R HE  FA
Sbjct: 4   TVDGEKYIRNLASYIRSHEKRFA 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,708
Number of Sequences: 5004
Number of extensions: 54664
Number of successful extensions: 155
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)