Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7o21
(596 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0529 - 3968813-3968983,3969060-3969116,3969215-3969526,396... 182 2e-46
03_05_0804 + 27835508-27835805,27836372-27836421,27837306-278379... 171 4e-43
09_04_0611 - 18948169-18948788,18948876-18948981,18949063-18949386 31 0.70
02_04_0241 - 21203528-21204040 31 0.92
12_01_0288 - 2160981-2161076,2161150-2161236,2161333-2161419,216... 29 2.1
10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,234... 29 3.7
12_01_0158 - 1199788-1200590,1200724-1200856 28 6.5
11_01_0159 - 1318825-1319618,1319722-1319854 28 6.5
02_05_1139 - 34381575-34381878,34382181-34382865,34383479-34383881 28 6.5
03_06_0253 - 32666152-32666360,32666443-32666632,32666764-326668... 27 8.6
03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238 27 8.6
>03_01_0529 -
3968813-3968983,3969060-3969116,3969215-3969526,
3969606-3970298,3971473-3971763
Length = 507
Score = 182 bits (443), Expect = 2e-46
Identities = 83/142 (58%), Positives = 110/142 (77%), Gaps = 1/142 (0%)
Frame = +2
Query: 173 NKVTVVLGAQWGDEGKGKVVDLLAVDSDIVCRCQGGNNAGHTVV-VDGKEFDFHLLPSGI 349
++V+ VLG+QWGDEGKGK+VD+LA DIV RCQGG NAGHT+ +GK+F HL+PSGI
Sbjct: 64 SQVSGVLGSQWGDEGKGKLVDVLAPRFDIVARCQGGANAGHTIYNSEGKKFALHLVPSGI 123
Query: 350 INQKCTSVIGNGVVIHLPGLFEELKKNELKGMKGCEGRLVISDRAHLVFDIHQQVDGLQE 529
+++ V+GNG VIH+PG F E+ E G+ C GR+++SDRAHL+FD+HQ VDGL+E
Sbjct: 124 LHEGTLCVVGNGAVIHVPGFFNEIDGLESNGVN-CNGRILVSDRAHLLFDLHQAVDGLRE 182
Query: 530 AEKGKNSLGTTKKGIGPAYSAK 595
AE + +GTTK+GIGP YS+K
Sbjct: 183 AELANSFIGTTKRGIGPCYSSK 204
>03_05_0804 +
27835508-27835805,27836372-27836421,27837306-27837998,
27838077-27838388,27838528-27838698
Length = 507
Score = 171 bits (416), Expect = 4e-43
Identities = 86/160 (53%), Positives = 109/160 (68%), Gaps = 19/160 (11%)
Frame = +2
Query: 173 NKVTVVLGAQWGDEGKGKVVDLLAVDSDIVCRCQ------------------GGNNAGHT 298
++V VLG QWGDEGKGK+VD+LA DIV RCQ GG NAGHT
Sbjct: 65 SQVAGVLGTQWGDEGKGKLVDILAQRFDIVARCQVGCLSSGAIHADCLYRTTGGANAGHT 124
Query: 299 VV-VDGKEFDFHLLPSGIINQKCTSVIGNGVVIHLPGLFEELKKNELKGMKGCEGRLVIS 475
+ +GK+F HL+PSGI+N+K V+GNG V+HLPG F+E+ E G+ CEGR+++S
Sbjct: 125 IYNSEGKKFSLHLVPSGILNEKTMCVVGNGAVVHLPGFFKEIDGLESNGIS-CEGRILVS 183
Query: 476 DRAHLVFDIHQQVDGLQEAEKGKNSLGTTKKGIGPAYSAK 595
DRAHL+FD HQ VDGL+E E G + +GTTK+GIGP YS K
Sbjct: 184 DRAHLLFDFHQTVDGLREVELGNSLIGTTKRGIGPCYSNK 223
>09_04_0611 - 18948169-18948788,18948876-18948981,18949063-18949386
Length = 349
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 296 TVVVDGKEFDFHLLPSGIINQKCTSVIGNGVVI 394
+V VDG F F L SG+ CT+ + +GV +
Sbjct: 253 SVAVDGGSFMFQLYGSGVYTGPCTADVNHGVTV 285
>02_04_0241 - 21203528-21204040
Length = 170
Score = 30.7 bits (66), Expect = 0.92
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -1
Query: 533 PLPGDRRPVDVYRKQDEPCPRSRVCLRNPSCLSARSSSAPQTVRAGG 393
P P PVD+ E R R R P+ +SA +S+AP+ + GG
Sbjct: 75 PQPATTDPVDIRAAAAEAAERVR---REPALVSAAASAAPRRLELGG 118
>12_01_0288 -
2160981-2161076,2161150-2161236,2161333-2161419,
2161641-2161726,2161805-2161908,2162618-2162704,
2162790-2162913,2163058-2163176,2163268-2163397,
2163583-2163671,2163804-2163892,2164579-2164672,
2164778-2164857,2164952-2165041,2166307-2166393,
2166495-2166539,2166966-2167042,2167120-2167225,
2167383-2167464,2167553-2167624,2168106-2168183,
2168259-2168349,2168826-2168979
Length = 717
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -1
Query: 500 YRKQDEPCPRSRVCLRNPSCLSARSSSAPQTVRA 399
Y +DEP PR +C+R P+ QT A
Sbjct: 506 YTSEDEPYPRGEICVRGPTIFCGYYKDEIQTREA 539
>10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,
2343027-2343236,2343436-2343654,2344038-2345000,
2345279-2345374,2345482-2345580,2345953-2346142,
2346594-2346823
Length = 1358
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 161 TKMENKVTVVLGAQWGDEGKGKVVDLLAVDSDIVCRCQGGNNAGHT 298
TK++ LG D G+G + ++ + +D + QGG AG T
Sbjct: 1071 TKVKQMTAFALGQLCDDGGEGLLDNVRVIQADTLSMIQGGWTAGST 1116
>12_01_0158 - 1199788-1200590,1200724-1200856
Length = 311
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 575 RCPFSWCRASSYPSPLPGDRRPVDVYRKQDEPCP 474
R PF+ C +SSY S + + +D + K + P P
Sbjct: 162 RSPFADCPSSSYASSMDNISKLLDGFMKTNSPSP 195
>11_01_0159 - 1318825-1319618,1319722-1319854
Length = 308
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 575 RCPFSWCRASSYPSPLPGDRRPVDVYRKQDEPCP 474
R PF+ C +SSY S + + +D + K + P P
Sbjct: 162 RSPFADCPSSSYASSMDNISKLLDGFMKTNSPSP 195
>02_05_1139 - 34381575-34381878,34382181-34382865,34383479-34383881
Length = 463
Score = 27.9 bits (59), Expect = 6.5
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -1
Query: 563 SWCRASSYPSPLPGD-RRPVDVYRKQDEPCPRSRVCLRNPSCLSARSSSAPQTVRAGGSP 387
+W A+ PSP D RRP ++ P R R C S + +++AP + AGGSP
Sbjct: 10 TWAAAAP-PSPSDWDGRRP-----RRGAPVVRRR-CSAPSSTPAPSAAAAPSHLAAGGSP 62
Query: 386 R 384
R
Sbjct: 63 R 63
>03_06_0253 - 32666152-32666360,32666443-32666632,32666764-32666862,
32666999-32667094,32667408-32668361,32668683-32668901,
32669282-32669491,32669617-32669879,32670041-32671717,
32672702-32672852
Length = 1355
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 161 TKMENKVTVVLGAQWGDEGKGKVVDLLAVDSDIVCRCQGGNNAGHT 298
TK++ LG D G+G + + + +D + QGG G T
Sbjct: 1075 TKVKQMTAFALGQLCDDGGEGLIDKVRVIQADTLSMIQGGFTGGST 1120
>03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238
Length = 697
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = -1
Query: 554 RASSYPSPLPGDRRPVDVYR----KQDEPCPRSRVCLRNPSCLSARSSSAPQTVRAGGSP 387
R +S+P+P P P + + + PCP S + S+ SSSA A G+P
Sbjct: 9 RLASWPTPPPPPPPPPPPAKAAAAEAERPCPPSSAATTS----SSSSSSASAAPAAAGAP 64
Query: 386 RHY 378
R Y
Sbjct: 65 RVY 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,735,135
Number of Sequences: 37544
Number of extensions: 405089
Number of successful extensions: 1133
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -