Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7o19
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac... 35 0.011
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 33 0.035
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 32 0.060
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 32 0.060
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 31 0.18
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc... 30 0.24
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 30 0.32
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 28 0.98
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 1.7
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 1.7
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 1.7
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 1.7
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 1.7
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 1.7
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 27 1.7
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 1.7
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 1.7
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 1.7
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 1.7
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 1.7
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|... 27 2.3
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 26 4.0
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 26 4.0
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 25 6.9
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 25 6.9
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 25 9.1
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 25 9.1
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz... 25 9.1
>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 34.7 bits (76), Expect = 0.011
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 325 TKLVVYKKLNFLDDILVDSTEDMEAEESN-QINEQKPKTEQEVITDNQEYYEIRLVDNAD 501
+KL++Y++ L+++ + D A +SN + PK + +I D Q + + +D AD
Sbjct: 65 SKLLLYRE-QLLEEVSSQHSTDAAASDSNTNFGTENPKPPKAIIKDEQSQSKTKSLDEAD 123
Query: 502 IE 507
+E
Sbjct: 124 VE 125
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 33.1 bits (72), Expect = 0.035
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 181 RKNILARETTWQEIAKQISRPVEECRKRWR 270
RKN++ W +I ++++R +CR RWR
Sbjct: 325 RKNVVEHGKCWTKIGRKMARMPNDCRDRWR 354
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 32.3 bits (70), Expect = 0.060
Identities = 24/118 (20%), Positives = 52/118 (44%)
Frame = +1
Query: 121 EKLIDLVKPYAHLYNVKDPSRKNILARETTWQEIAKQISRPVEECRKRWRGLRDSYTRSK 300
E+ I+L + Y L ++++ ++ E W+E Q+ VEE + + ++ ++S
Sbjct: 500 EQSIELTRLYKQLQDIEEDYENKLMRMEQQWREDVDQLQEYVEEITQELQDTKEVLSKSS 559
Query: 301 RLGSMPGYTKLVVYKKLNFLDDILVDSTEDMEAEESNQINEQKPKTEQEVITDNQEYY 474
+ Y ++V + +I E EES + +++ + + IT E Y
Sbjct: 560 K--ESDDYEEVVGKLRTEAEREIEKFEKTIRENEESISLFKEEVEKLTDEITQLSERY 615
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 32.3 bits (70), Expect = 0.060
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 16/83 (19%)
Frame = +1
Query: 103 WTTEEDEKLIDLVKP--------------YAHLYNVKDPSRKNILARET-TWQEIAKQI- 234
WT EE+ KL+DLVK + H + ++ I A ++ W I+K++
Sbjct: 385 WTNEEEAKLLDLVKSSYRSSFHTKKMTSLFTHNNHTTSNIQREIPASDSIAWHSISKKLG 444
Query: 235 SRPVEECRKRWRGLRDSYTRSKR 303
++ E CRK++ SY+ ++R
Sbjct: 445 TKSPESCRKQYEKTIASYSSNQR 467
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 30.7 bits (66), Expect = 0.18
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 613 LASVPFSYDHCSFFLFS 563
+A VPF+Y HC+ +LFS
Sbjct: 283 MAGVPFTYSHCTLYLFS 299
>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 30.3 bits (65), Expect = 0.24
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 52 PYRNFDIKLEMPMNAVGWTTEEDEKLIDLVKPYAHLY 162
P+R + I+LE V W D +IDL K Y +Y
Sbjct: 270 PFRRWIIELEDVSRNVFWVWNHDSNVIDLEKQYNQVY 306
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 29.9 bits (64), Expect = 0.32
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +1
Query: 376 DSTEDMEAEESNQINEQKPKTEQEVITDNQEYYEIRLVDNADIESKFIKILPKQIE 543
D D E ++ Q+N++K ++ +E T+N E+ D+ES K L QIE
Sbjct: 238 DERSDEEESDNEQVNDEKKQSSEEDTTENNSAAEVIDETVNDLESAVSKGL--QIE 291
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 28.3 bits (60), Expect = 0.98
Identities = 13/58 (22%), Positives = 31/58 (53%)
Frame = +1
Query: 385 EDMEAEESNQINEQKPKTEQEVITDNQEYYEIRLVDNADIESKFIKILPKQIENSNKQ 558
ED+ E S+ +N+++ V + E+++ ++ +++ + PK +NSNK+
Sbjct: 4 EDITLEHSDDLNKEESGESNRVNIEEPEHHDNSNKESTNLDDLNMLEEPKYHDNSNKE 61
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +1
Query: 427 KPKTEQEVITDNQEYYEIRLVDNADIESKFIKILPKQIENSN 552
K E+ + + EYY + ++ N S +K+ K ++N N
Sbjct: 424 KALIEKNISWADDEYYHMDVMANGSTRSSSVKLELKSMDNQN 465
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 187 NILARETTWQEIAKQISRPVEEC 255
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 187 NILARETTWQEIAKQISRPVEEC 255
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 187 NILARETTWQEIAKQISRPVEEC 255
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 187 NILARETTWQEIAKQISRPVEEC 255
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 187 NILARETTWQEIAKQISRPVEEC 255
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 187 NILARETTWQEIAKQISRPVEEC 255
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +1
Query: 373 VDSTEDME--AEESNQINEQKPKTEQEVITDNQEYYEIRLVDNADIESKFIKILPKQIEN 546
+DS E+++ +++ NQ+N + K E + T+ + ++ +N D +S+ K E+
Sbjct: 16 LDSDEEVQRISDKVNQLNTSENKNEDQKATNLSDRLGPKITENVDAKSEQDKATNTIAED 75
Query: 547 SN 552
+N
Sbjct: 76 AN 77
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 187 NILARETTWQEIAKQISRPVEEC 255
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 187 NILARETTWQEIAKQISRPVEEC 255
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 187 NILARETTWQEIAKQISRPVEEC 255
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 187 NILARETTWQEIAKQISRPVEEC 255
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 187 NILARETTWQEIAKQISRPVEEC 255
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 169 KDPSRKNILARETTWQEIAKQISRPVEECRKRWRGL 276
++ S L + T QE+A++ +R EC + WR +
Sbjct: 144 REKSNLEKLVADHTIQELARENARLKSECERAWRSV 179
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +1
Query: 364 DILVDSTEDMEAEESNQINEQKPKTEQEVITDNQEYYEIR--LVDNAD--IESKFIKILP 531
D +V+ T + ES + + K + + +Q YYE+R ++DN I+ + + +
Sbjct: 611 DFVVERTPSDKISESKEAFDAKVEEISDQRAISQRYYELRKKMIDNTGEYIKDEEEQAVI 670
Query: 532 KQIENSNKQP 561
EN N++P
Sbjct: 671 PLDENGNEKP 680
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 361 DDILVDSTEDMEAEESNQINEQKPKTEQEVITDNQ 465
+D+LVD ++EAE+SN + KT + ++ NQ
Sbjct: 655 NDVLVDLNPNVEAEKSNP-HSNSQKTSKNDMSRNQ 688
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 385 EDMEAEESNQINEQKPKTEQEVITDNQE 468
ED+E EE++ NE + + V +N+E
Sbjct: 620 EDLEDEENSSDNEMEESSGSSVTAENEE 647
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.4 bits (53), Expect = 6.9
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +1
Query: 316 PGYTKLVVYKKLNFLDDILVDSTEDMEA---EESNQINEQKPKTEQEVITDNQEYYEIRL 486
P T VV+K D+ +D+ D + E+ + NE P T+++ DN ++ +
Sbjct: 46 PFRTSNVVFKSKEPKDNKPLDNKNDPKKTHNEDESHTNESLPSTDKKKKKDNDDFKQNLK 105
Query: 487 VDNADIESKF 516
+ E K+
Sbjct: 106 SSSNKTEEKY 115
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 358 LDDILVDSTEDMEAEESNQINEQKPKTEQE 447
L+D+ S ED+ +E+ +NE+ + EQ+
Sbjct: 125 LEDVDESSAEDVSGDEAEIMNEEGQQIEQK 154
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 64 FDIKLEMPMNAVGWTTEEDEKLIDL 138
FD K+E+P A +TE DE+ I L
Sbjct: 260 FDSKVEIPEAAPSSSTESDEESIPL 284
>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 669
Score = 25.0 bits (52), Expect = 9.1
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 73 KLEMPMNAVGWTTEEDEKLIDLVKPYAHLYNVKDPSRKNILARETTWQE 219
K+ P A+ E KL+D N+K PSR + L++ TW+E
Sbjct: 411 KVVQPTEAIEGDVYESLKLLDSATK-----NIKIPSRFDWLSQIQTWKE 454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,684
Number of Sequences: 5004
Number of extensions: 45264
Number of successful extensions: 192
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -