Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7o19
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.9  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   4.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.6  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 127 LIDLVKPYAHLYNVKDPSRKNILARETTWQEIAKQISRPVEE 252
           L DLV+    L++ K+     I  +    Q   + I  PVEE
Sbjct: 132 LCDLVQGLERLFDEKNAGNNKITMKSKKEQNAEEDIVDPVEE 173


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 370 LVDSTEDMEAEESNQINEQKPKTEQEVITDN 462
           ++ S ++ +  E   IN+    TEQ V+  N
Sbjct: 804 VISSRKEQKKSEEKNINDHCVTTEQSVVVTN 834


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 106 TTEEDEKLID-LVKPYAHLYNVKDPSRKNIL 195
           TT E+EK+    + P   L  V D  RKN+L
Sbjct: 35  TTVEEEKICHKAITPLDRLQRVVDWFRKNML 65


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 243 WSGYLFRYFLPCC 205
           +S YL + ++PCC
Sbjct: 241 FSYYLIQIYIPCC 253


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 243 WSGYLFRYFLPCC 205
           +S YL + ++PCC
Sbjct: 241 FSYYLIQIYIPCC 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,452
Number of Sequences: 438
Number of extensions: 2970
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)