Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7o15
         (230 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   1.0  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    23   5.4  
SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces pom...    23   7.2  

>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 16   LCCQQITLFALFQIFSTDNYLFSI 87
            LC Q  +L  +F++F T NY  SI
Sbjct: 1360 LCKQIFSLSPMFEVFVTQNYANSI 1383


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 43  ALFQIFSTDNYLFSICMYFNK*SGIFVAKM 132
           A+     ++ Y F I +Y N    IF+ K+
Sbjct: 287 AMIHCIGSNGYAFPIHLYLNMKKNIFLGKL 316


>SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 130 MSFKFI*CILYWEVYLFAIKIESNQ*IIVD*KK 228
           ++F F  C L W+ ++FA   E     + + KK
Sbjct: 114 LTFTFAFCDLMWQFWMFAAMSEERAKYLKNQKK 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 824,645
Number of Sequences: 5004
Number of extensions: 12238
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)