Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7o15
         (230 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0172 - 13072575-13073800,13075919-13076054                       31   0.13 
09_02_0339 + 7452967-7453068,7453281-7453339,7453889-7454701,745...    27   1.6  
06_03_0540 - 21923763-21923945,21924027-21924776,21924895-219253...    27   2.1  
01_05_0652 - 23934604-23934636,23934783-23934893,23935000-239351...    26   3.7  

>09_03_0172 - 13072575-13073800,13075919-13076054
          Length = 453

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 135 THFSHKYATSFIEVHTNRK*IIISRKNL 52
           T F H+Y +S I  H NR+ +I++ K+L
Sbjct: 263 TWFKHEYQSSMITTHENRRNVILTMKDL 290


>09_02_0339 +
           7452967-7453068,7453281-7453339,7453889-7454701,
           7455123-7455498,7455978-7456019
          Length = 463

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -1

Query: 65  VEKI*NKANKVICWQHKDNL 6
           +E++ N   K++CW H+D +
Sbjct: 246 IERVVNTFGKLVCWDHRDRV 265


>06_03_0540 -
           21923763-21923945,21924027-21924776,21924895-21925323,
           21925509-21925619,21925715-21926040,21926130-21926251,
           21926905-21927020,21927119-21927243,21927338-21927596
          Length = 806

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 158 KIHHINLKLILATNMPLHLLKYIQIENK*LSVEKI*NKANKVICW 24
           ++HH NL L+L     +  L Y  +EN  L  + I NK  + + W
Sbjct: 502 QLHHPNLVLLLGFCPEIGCLVYEYMENGSLEDQLINNKGQQSLHW 546


>01_05_0652 -
           23934604-23934636,23934783-23934893,23935000-23935188,
           23935893-23936012,23936109-23936273,23936638-23936790,
           23936867-23936976,23937280-23937397,23938197-23938427,
           23938984-23939175,23939661-23939945,23940637-23940686,
           23940846-23940921,23941048-23941135,23941689-23941771,
           23941883-23942248,23942462-23942476,23942909-23943018,
           23943134-23943231,23943961-23944019
          Length = 883

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 156 NTSYKLETHFSHKYATSFIEVHTNRK*IIIS 64
           NTSY L T   H  +   ++ H N++ +I S
Sbjct: 678 NTSYSLRTFTGHSASVMSLDFHPNKEDMICS 708


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,426,007
Number of Sequences: 37544
Number of extensions: 55652
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 14,793,348
effective HSP length: 55
effective length of database: 12,728,428
effective search space used: 267296988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)