Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7o15
         (230 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084161-1|ABD63205.1| 1375|Caenorhabditis elegans Hypothetical ...    27   1.4  
Z75531-10|CAJ85759.1|  500|Caenorhabditis elegans Hypothetical p...    26   4.1  
Z70686-9|CAA94614.3|  915|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z83123-9|CAB05605.1|  321|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z83123-3|CAB05604.1|  321|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>AC084161-1|ABD63205.1| 1375|Caenorhabditis elegans Hypothetical
            protein Y92H12A.5 protein.
          Length = 1375

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 191  ILIANKYTSQYKIHHINLKLILATNMPL 108
            +LIAN Y  +Y +  ++++L+  T  PL
Sbjct: 1061 LLIANAYRLEYDVDDVSVELVCLTKRPL 1088


>Z75531-10|CAJ85759.1|  500|Caenorhabditis elegans Hypothetical
           protein C54D10.12 protein.
          Length = 500

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 164 QYKIHHINLKLI-LATNMPLHLLKYIQIEN 78
           QYKIHH N KL+    N   +LL  I  EN
Sbjct: 274 QYKIHHENAKLVKTLENNIKNLLMQITNEN 303


>Z70686-9|CAA94614.3|  915|Caenorhabditis elegans Hypothetical
           protein R10H10.7 protein.
          Length = 915

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 176 KYTSQYKIHHINLKLILATNMPLHLLKYIQIENK*LSVEKI 54
           K+  QY++ H N+KL+  T +    L+ I + +  + VE +
Sbjct: 449 KFKLQYQLSHENVKLVCDTLVEFGKLEVIDMVHNLMQVEPL 489


>Z83123-9|CAB05605.1|  321|Caenorhabditis elegans Hypothetical
           protein T04A11.1 protein.
          Length = 321

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -3

Query: 210 YLLI*FNFNSK*VHFP--I*NTSYKLETHFSHKYATSFIEV 94
           YL I   FN     FP  I ++ YK   HFS ++ TS  EV
Sbjct: 37  YLKIAAEFNVSETAFPVPIGSSDYKKCAHFSLRWFTSTAEV 77


>Z83123-3|CAB05604.1|  321|Caenorhabditis elegans Hypothetical
           protein T04A11.4 protein.
          Length = 321

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -3

Query: 210 YLLI*FNFNSK*VHFP--I*NTSYKLETHFSHKYATSFIEV 94
           YL I   FN     FP  I ++ YK   HFS ++ TS  EV
Sbjct: 37  YLKIAAEFNVSETAFPVPIGSSDYKKCAHFSLRWFTSTAEV 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,433,230
Number of Sequences: 27780
Number of extensions: 65928
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 12,740,198
effective HSP length: 56
effective length of database: 11,184,518
effective search space used: 223690360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)