Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7o09
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    27   2.6  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    26   5.9  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   7.9  

>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
            Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 662  LLQTYAPVKDTLCNIMQHQQLLETGQSDMCYFVELCLFLAR 540
            LLQ Y  +K  + N+ + QQLL T  S++   V+    L++
Sbjct: 963  LLQRYWDLKREIINLQKRQQLLLTTNSNLMSSVDTLSILSK 1003


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 66  CIIYGDEYEYLTPHLANTED 7
           C+I+ DE + + PH  N+ D
Sbjct: 749 CVIFFDELDSIAPHRGNSSD 768


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -1

Query: 462 SRCSSLLAVPHFETILKMIVTKPSTFLFSSTAVGTLSVL*QTAPTET 322
           S+ +S  A    ETI+   V   STF  S T  GT+ V+  TA T T
Sbjct: 203 SKTTSPTAGTITETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTIT 249



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 426 ETILKMIVTKPSTFLFSSTAVGTLSVL*QTAPTET 322
           ETI+   V   STF  S T  GT+ V+  TA T T
Sbjct: 565 ETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTVT 599



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 426 ETILKMIVTKPSTFLFSSTAVGTLSVL*QTAPTET 322
           ETI+   V   STF  S T  GT+ V+  TA T T
Sbjct: 600 ETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTVT 634



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 426 ETILKMIVTKPSTFLFSSTAVGTLSVL*QTAPTET 322
           ETI+   V   STF  S T  GT+ V+  TA T T
Sbjct: 740 ETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTVT 774


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,620
Number of Sequences: 5004
Number of extensions: 58907
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)