Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7o09
         (693 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071743-1|AAL49365.2|  198|Drosophila melanogaster RH48588p pro...    77   2e-14
AY113564-1|AAM29569.1|  179|Drosophila melanogaster RH09246p pro...    77   3e-14
AE013599-3623|AAM68253.1|  179|Drosophila melanogaster CG30185-P...    77   3e-14
BT012478-1|AAS93749.1|  341|Drosophila melanogaster RE15368p pro...    35   0.091
BT001612-1|AAN71367.1|  460|Drosophila melanogaster RE32823p pro...    35   0.091
AF148814-1|AAF26671.1|  431|Drosophila melanogaster translation ...    35   0.091
AF148813-1|AAF26670.1|  360|Drosophila melanogaster translation ...    35   0.091
AE014297-4355|AAN14165.1|  431|Drosophila melanogaster CG11901-P...    35   0.091
AE014297-4354|AAF56877.2|  431|Drosophila melanogaster CG11901-P...    35   0.091

>AY071743-1|AAL49365.2|  198|Drosophila melanogaster RH48588p
           protein.
          Length = 198

 Score = 77.4 bits (182), Expect = 2e-14
 Identities = 45/158 (28%), Positives = 85/158 (53%), Gaps = 7/158 (4%)
 Frame = +2

Query: 239 FK*SQIIFMPKMSTNNVDVIKMIGKYLDVSVGAVCYNTDKVPTAVL-ENKNVEGFVTIIL 415
           F+    I +  ++  +V  ++ I   L V+ G V  N ++V T    + K+V GF +I+ 
Sbjct: 7   FRTPNTITLISLTMCDVATVQKIANCLGVNPGKVQLNEEQVVTRTSGQKKSVAGFASILE 66

Query: 416 SMVS--KCGTA----SSEEQRLLTYQWLEYISMFSNQAVANSTFAFKFLQEINRALQSNT 577
           S+ S  K  TA    +S E     YQW+E+  ++      +   + + L + N+   S +
Sbjct: 67  SLASESKSETAQNSRASREVEAQVYQWIEFSVLYVAPGSKDKYVSKQLLADFNKLFASKS 126

Query: 578 YLTGQFLTIADVALYYIVYPLLEHMSVAERDAFVHLCR 691
           YL G F+T+AD+A+YY +Y L++ +S  +++ +++L R
Sbjct: 127 YLVGHFITLADLAVYYAIYDLVKSLSPVDKEVYLNLSR 164


>AY113564-1|AAM29569.1|  179|Drosophila melanogaster RH09246p
           protein.
          Length = 179

 Score = 76.6 bits (180), Expect = 3e-14
 Identities = 43/143 (30%), Positives = 79/143 (55%), Gaps = 7/143 (4%)
 Frame = +2

Query: 284 NVDVIKMIGKYLDVSVGAVCYNTDKVPTAVL-ENKNVEGFVTIILSMVS--KCGTA---- 442
           +V  ++ I   L V+ G V  N ++V T    + K+V GF +I+ S+ S  K  TA    
Sbjct: 3   DVATVQKIANCLGVNPGKVQLNEEQVVTRTSGQKKSVAGFASILESLASESKSETAQNSR 62

Query: 443 SSEEQRLLTYQWLEYISMFSNQAVANSTFAFKFLQEINRALQSNTYLTGQFLTIADVALY 622
           +S E     YQW+E+  ++      +   + + L + N+   S +YL G F+T+AD+A+Y
Sbjct: 63  ASREVEAQVYQWIEFSVLYVAPGSKDKYVSKQLLADFNKLFASKSYLVGHFITLADLAVY 122

Query: 623 YIVYPLLEHMSVAERDAFVHLCR 691
           Y +Y L++ +S  +++ +++L R
Sbjct: 123 YAIYDLVKSLSPVDKEVYLNLSR 145


>AE013599-3623|AAM68253.1|  179|Drosophila melanogaster CG30185-PA
           protein.
          Length = 179

 Score = 76.6 bits (180), Expect = 3e-14
 Identities = 43/143 (30%), Positives = 79/143 (55%), Gaps = 7/143 (4%)
 Frame = +2

Query: 284 NVDVIKMIGKYLDVSVGAVCYNTDKVPTAVL-ENKNVEGFVTIILSMVS--KCGTA---- 442
           +V  ++ I   L V+ G V  N ++V T    + K+V GF +I+ S+ S  K  TA    
Sbjct: 3   DVATVQKIANCLGVNPGKVQLNEEQVVTRTSGQKKSVAGFASILESLASESKSETAQNSR 62

Query: 443 SSEEQRLLTYQWLEYISMFSNQAVANSTFAFKFLQEINRALQSNTYLTGQFLTIADVALY 622
           +S E     YQW+E+  ++      +   + + L + N+   S +YL G F+T+AD+A+Y
Sbjct: 63  ASREVEAQVYQWIEFSVLYVAPGSKDKYVSKQLLADFNKLFASKSYLVGHFITLADLAVY 122

Query: 623 YIVYPLLEHMSVAERDAFVHLCR 691
           Y +Y L++ +S  +++ +++L R
Sbjct: 123 YAIYDLVKSLSPVDKEVYLNLSR 145


>BT012478-1|AAS93749.1|  341|Drosophila melanogaster RE15368p
           protein.
          Length = 341

 Score = 35.1 bits (77), Expect = 0.091
 Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
 Frame = +2

Query: 542 LQEINRALQSNTYLTGQFLTIADVALYYIVYPLLEH-MSVAERDAFVHLCR 691
           LQ++N+ LQ  T+L G+ +T+AD+ ++  +  L E+ +  + R AF ++ R
Sbjct: 155 LQQLNQKLQDATFLAGERITLADIVVFSSLLHLYEYVLEPSVRSAFGNVNR 205


>BT001612-1|AAN71367.1|  460|Drosophila melanogaster RE32823p
           protein.
          Length = 460

 Score = 35.1 bits (77), Expect = 0.091
 Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
 Frame = +2

Query: 542 LQEINRALQSNTYLTGQFLTIADVALYYIVYPLLEH-MSVAERDAFVHLCR 691
           LQ++N+ LQ  T+L G+ +T+AD+ ++  +  L E+ +  + R AF ++ R
Sbjct: 164 LQQLNQKLQDATFLAGERITLADIVVFSSLLHLYEYVLEPSVRSAFGNVNR 214


>AF148814-1|AAF26671.1|  431|Drosophila melanogaster translation
           elongation factor1 gamma protein.
          Length = 431

 Score = 35.1 bits (77), Expect = 0.091
 Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
 Frame = +2

Query: 542 LQEINRALQSNTYLTGQFLTIADVALYYIVYPLLEH-MSVAERDAFVHLCR 691
           LQ++N+ LQ  T+L G+ +T+AD+ ++  +  L E+ +  + R AF ++ R
Sbjct: 135 LQQLNQKLQDATFLAGERITLADIVVFSSLLHLYEYVLEPSVRSAFGNVNR 185


>AF148813-1|AAF26670.1|  360|Drosophila melanogaster translation
           elongation factor1 gamma protein.
          Length = 360

 Score = 35.1 bits (77), Expect = 0.091
 Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
 Frame = +2

Query: 542 LQEINRALQSNTYLTGQFLTIADVALYYIVYPLLEH-MSVAERDAFVHLCR 691
           LQ++N+ LQ  T+L G+ +T+AD+ ++  +  L E+ +  + R AF ++ R
Sbjct: 64  LQQLNQKLQDATFLAGERITLADIVVFSSLLHLYEYVLEPSVRSAFGNVNR 114


>AE014297-4355|AAN14165.1|  431|Drosophila melanogaster CG11901-PB,
           isoform B protein.
          Length = 431

 Score = 35.1 bits (77), Expect = 0.091
 Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
 Frame = +2

Query: 542 LQEINRALQSNTYLTGQFLTIADVALYYIVYPLLEH-MSVAERDAFVHLCR 691
           LQ++N+ LQ  T+L G+ +T+AD+ ++  +  L E+ +  + R AF ++ R
Sbjct: 135 LQQLNQKLQDATFLAGERITLADIVVFSSLLHLYEYVLEPSVRSAFGNVNR 185


>AE014297-4354|AAF56877.2|  431|Drosophila melanogaster CG11901-PA,
           isoform A protein.
          Length = 431

 Score = 35.1 bits (77), Expect = 0.091
 Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
 Frame = +2

Query: 542 LQEINRALQSNTYLTGQFLTIADVALYYIVYPLLEH-MSVAERDAFVHLCR 691
           LQ++N+ LQ  T+L G+ +T+AD+ ++  +  L E+ +  + R AF ++ R
Sbjct: 135 LQQLNQKLQDATFLAGERITLADIVVFSSLLHLYEYVLEPSVRSAFGNVNR 185


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,733,428
Number of Sequences: 53049
Number of extensions: 605801
Number of successful extensions: 938
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)