Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7o08
         (592 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0)                  31   0.70 
SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_564| Best HMM Match : TrkA_N (HMM E-Value=0.05)                     29   2.8  
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   8.7  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0)
          Length = 445

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +3

Query: 552 RLVGPNCPGIIAP 590
           RL+GPNCPG+I P
Sbjct: 14  RLIGPNCPGVITP 26


>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1487

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 470 GHFSLNSF*NGC-CSSRGRYINNRGSCSC 387
           GHF L  + + C C+  G   + RG CSC
Sbjct: 381 GHFFLQGYCSRCQCNGHGSICDERGKCSC 409


>SB_564| Best HMM Match : TrkA_N (HMM E-Value=0.05)
          Length = 226

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/35 (54%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 225 KVIVQGFTGKQGTFHSQQALDYGTKV-VGGVSPKK 326
           KV+V G TGK G    QQALD G  V V   SP+K
Sbjct: 9   KVVVFGGTGKTGLHVVQQALDRGHHVTVIARSPEK 43


>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 428  SRGRYINNRGSCSCACLCLFD 366
            ++G  +NN+ +CSC  +C F+
Sbjct: 5141 AKGCSVNNKATCSCPDICTFE 5161


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +3

Query: 186  AETRKNLILTSETKVIVQGFTGKQGTFHSQQ-ALDY-GTKVVGGVSPKKAGTEHLGKPVF 359
            AE R NL L ++  V   GF     TF S++ +L   G+ + G  + + +GT   GKP  
Sbjct: 6182 AEGRTNLDLRAQL-VGDAGFAESMATFKSKRPSLSREGSDIGGKPTRESSGTSLRGKPPS 6240

Query: 360  GTVKEAKAGTGAT 398
            G   +    +G T
Sbjct: 6241 GARPKTSTSSGLT 6253


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,871,795
Number of Sequences: 59808
Number of extensions: 397805
Number of successful extensions: 1009
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)