Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7o04
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    28   0.89 
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    26   4.7  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    25   6.2  

>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -2

Query: 299 HHPSQIVLLLEDDSMSTLDNSQFGRIQCPIIHIP 198
           H+P  ++LL ED+S+S LD S  G I    + IP
Sbjct: 395 HNPKNLLLLSEDNSLSLLDIST-GNISNMSLSIP 427


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 484 LVYTVLYIPLIEIGTYVLY 540
           L+Y +L +P+I +GT +LY
Sbjct: 6   LLYRILTLPIILVGTTILY 24


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 392 LPLSHLNQEQCNELIQSKGFSNNKKS 469
           L  +H N+E+C +L    G+ NN +S
Sbjct: 493 LAAAHRNREKCKKLSVELGYLNNHES 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,128
Number of Sequences: 5004
Number of extensions: 45511
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)