Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7o04
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1645 + 38884606-38884777,38885509-38885567,38885933-388861... 40 0.001
05_01_0360 + 2814139-2814627,2815203-2815334,2815480-2815583,281... 31 0.69
10_08_0877 + 21230447-21230815,21231855-21232208,21232417-212325... 30 1.2
11_06_0696 + 26358713-26359779,26359826-26360110,26360177-263603... 30 1.6
09_02_0434 + 9365038-9366150,9367352-9368680,9368906-9370012,937... 30 1.6
07_01_0593 + 4417753-4417759,4418240-4419698,4419819-4421301,442... 30 1.6
06_03_0778 - 24523780-24526353 28 4.8
10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719 28 6.4
03_02_0990 - 13028011-13028114,13028182-13028554,13029488-130296... 28 6.4
09_03_0188 + 13266080-13266329,13268124-13268201,13268274-132683... 27 8.5
>01_06_1645 +
38884606-38884777,38885509-38885567,38885933-38886114,
38886559-38886634
Length = 162
Score = 40.3 bits (90), Expect = 0.001
Identities = 14/59 (23%), Positives = 35/59 (59%)
Frame = +2
Query: 269 PEVKRFVMDDAPNYDRVEVKFISGAPPELVLLGEGDHELERLPLSHLNQEQCNELIQSK 445
PE+ F+ +D ++ VE +++ G+PP+L++L + + E + + + +E + ++ K
Sbjct: 96 PEIVGFLEEDKDDFPYVEARYVYGSPPKLIMLDDKGDQKETIRIDNWKREHIRQFLKEK 154
>05_01_0360 + 2814139-2814627,2815203-2815334,2815480-2815583,
2816180-2816292,2818409-2818506,2818636-2818815,
2818893-2819114,2819270-2819404,2819489-2819771,
2819858-2819931,2820164-2820384,2820463-2820550,
2820651-2820744,2820827-2821015,2821369-2821400,
2821542-2821621,2821718-2821807,2821911-2821980,
2822240-2822285,2822370-2822428,2822588-2822753,
2822929-2823107,2823186-2823392,2823529-2823633,
2823701-2823703
Length = 1152
Score = 31.1 bits (67), Expect = 0.69
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +2
Query: 320 EVKFISGAPPELVLLGEGDHELERLPLSHLNQEQCNELIQSKGFSNNKKSDL*TT*CIRY 499
EVK++ A + +GEGD E + PL+ QE+ +L++ +GFS + D T IR
Sbjct: 893 EVKYLVQANQKKDTVGEGDDEDQLEPLTVEEQEEKEQLLE-EGFSTWTRRDFNT--FIRA 949
Query: 500 C 502
C
Sbjct: 950 C 950
>10_08_0877 +
21230447-21230815,21231855-21232208,21232417-21232504,
21232844-21233268,21233477-21233632,21233849-21234016,
21234170-21234310,21234393-21234629,21234710-21234823,
21235096-21235272
Length = 742
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 323 VKFISGAPPELVLLGEGDHELERLPLSHLNQEQCNELIQSKGFSNNKKSD 472
+ FI P EL ++ GD P S L + C+ + +SN + SD
Sbjct: 230 LNFIGSLPRELEVVNSGDASAIEKPQSELFKHDCSSSGKCSEYSNTESSD 279
>11_06_0696 +
26358713-26359779,26359826-26360110,26360177-26360356,
26360516-26360585,26361051-26361950
Length = 833
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +2
Query: 230 RIESCRGCS-LNRLPEVKRFVMDDAPNYDRVEVKFISGAPPELVLLGEGDHELERLPLSH 406
++E C G ++ LP+V+ +++ PN VE + G E + L EG E+ L +
Sbjct: 757 QVEGCEGLERVSNLPQVRELFVNECPNLRHVEE--LGGL--EQLWLDEGMQEISSLWVPR 812
Query: 407 LNQEQCNEL 433
L QEQ +L
Sbjct: 813 L-QEQHRQL 820
>09_02_0434 + 9365038-9366150,9367352-9368680,9368906-9370012,
9370960-9371022
Length = 1203
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 398 LSHLNQEQCNELIQSKGFSNNKKSDL*TT*CIRYCTF 508
L HL CN + Q+ G + N KS + T C+RY +F
Sbjct: 1072 LQHLEVSYCNSITQAFGHNMN-KSTVPTFPCLRYLSF 1107
>07_01_0593 + 4417753-4417759,4418240-4419698,4419819-4421301,
4421378-4421419,4421420-4421584,4421669-4421864,
4421955-4422066,4422154-4422301,4422417-4422614,
4422710-4422866,4422882-4422988,4423084-4423245,
4423314-4423562,4423676-4423810
Length = 1539
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +2
Query: 206 ELSDIVSARIESCRGCSLNRLPEVKRFVMDDAPNYDRVEVKFISGAPPELV 358
EL+ I RI GC + LP+ KR + +Y+RV+VK SG +L+
Sbjct: 1388 ELNLIRCQRIPKRPGCDWHDLPDEKR----NVNHYERVQVKLSSGQLVDLI 1434
>06_03_0778 - 24523780-24526353
Length = 857
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/51 (25%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = -2
Query: 299 HHPSQIVLLLEDDSMSTLDN-SQFGRIQ--CPIIHIPKIKRQLHKILQLIK 156
H +++L +DD+ L+ +F R+ C I+H P ++ +H+++Q+++
Sbjct: 764 HGRVEVLLRSDDDAAEDLERVERFARVAFWC-IVHNPSLRPTIHQVVQMLE 813
>10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719
Length = 780
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +2
Query: 353 LVLLGEGD-HELERLPLSHLNQEQCNELIQSKGFSNNKKSD 472
++++GE H LE+L ++L E+IQSK FS +KKSD
Sbjct: 296 IMVIGEVPVHNLEKLGEAYLM-----EIIQSKAFSLSKKSD 331
>03_02_0990 -
13028011-13028114,13028182-13028554,13029488-13029631,
13030389-13030396,13030634-13030711,13030968-13031132,
13031414-13031471
Length = 309
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 56 TYYIREIVCFSPLKY*FVVQLLKCKFLFR 142
TY++ E +C F+ QL++C++L R
Sbjct: 36 TYHVLENICTLKFSLGFIFQLIQCRYLKR 64
>09_03_0188 +
13266080-13266329,13268124-13268201,13268274-13268374,
13268474-13268566,13268648-13268719,13268808-13268930,
13269143-13269412,13271154-13271204,13271325-13271513,
13271613-13271777
Length = 463
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +2
Query: 314 RVEVKFISGAPPELVLLGEGDHELERLPLSHLNQEQCN 427
++ ++ + +P E++ LG+G ++ E L L+ L CN
Sbjct: 397 KILLESLCASPDEVMALGDGKNDKEMLQLAGLGVALCN 434
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,804,767
Number of Sequences: 37544
Number of extensions: 249772
Number of successful extensions: 557
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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