Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7o04
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024211-2|AAF36064.2|  152|Caenorhabditis elegans Hypothetical ...    34   0.066
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AC025716-3|AAK39618.1|  690|Caenorhabditis elegans Hypothetical ...    28   4.3  
L16621-8|AAA28228.1|  632|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z50794-2|CAA90657.2|  681|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U64858-6|AAB18283.2|  392|Caenorhabditis elegans Hypothetical pr...    27   7.5  

>AC024211-2|AAF36064.2|  152|Caenorhabditis elegans Hypothetical
           protein Y76B12C.3 protein.
          Length = 152

 Score = 34.3 bits (75), Expect = 0.066
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
 Frame = +2

Query: 104 FVVQLLKCKFLFRMKI----TLLSVVIFCAVVALSSEYELSDIVSARIESCRGCSLNRLP 271
           F  + LKC    R+      TLL+  + C +     E++     +A +E C  C+L R P
Sbjct: 34  FNPETLKCGLCERLSDYHLETLLTDCLQCCIK--EEEFKHEKYPTAILEVCE-CNLARFP 90

Query: 272 EVKRFVMDDAPNY--DRVEVKFISGAPPELVL 361
           +V+ FV  D       +V+VK + G  P++ L
Sbjct: 91  QVQAFVHKDMARQFGGKVKVKHVRGVRPQVAL 122


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
           protein F42C5.10 protein.
          Length = 1292

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 177 VQLSLYLRNMNYRTLYPPELRVVEGAH 257
           V  S Y R  +++T +PPE+ + EG H
Sbjct: 335 VYSSTYERKYDFKTTFPPEIEMPEGYH 361


>AC025716-3|AAK39618.1|  690|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.10 protein.
          Length = 690

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = -1

Query: 267 RRFNEHPRQLSIRADTMSDNSYSEDKATTAQNITTDKSVIFILNKNLHLSN 115
           R+ N   +  S   + M D +  E+KA++AQ  T++++ + ILN++L   N
Sbjct: 52  RKENVEAKTYSTLLEIMLDEA--EEKASSAQETTSEENNLKILNRDLVAEN 100


>L16621-8|AAA28228.1|  632|Caenorhabditis elegans Hypothetical
           protein ZK688.2 protein.
          Length = 632

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/58 (22%), Positives = 29/58 (50%)
 Frame = -1

Query: 306 LGASSITNRFTSGRRFNEHPRQLSIRADTMSDNSYSEDKATTAQNITTDKSVIFILNK 133
           +  SS   +  +G+R +EHP Q  +  D + D+   E++ T  +  +  +  I ++ +
Sbjct: 496 IDTSSSQPQLATGKRGSEHPFQHHVLDDVLEDDESDENQLTIRKKSSVLQPAITLVER 553


>Z50794-2|CAA90657.2|  681|Caenorhabditis elegans Hypothetical
           protein F59F5.3 protein.
          Length = 681

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 14  VSENYYDDCINILYTYYIREIVCFSPL 94
           + + Y ++C+  +Y YY  E+ CF  L
Sbjct: 557 IPKEYPNECLKGVYYYYSSEVYCFGRL 583


>U64858-6|AAB18283.2|  392|Caenorhabditis elegans Hypothetical
           protein C16D9.5 protein.
          Length = 392

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 405 ISIRNSAM--NLYRAKDSRIIKNLTYKLLSVYGTVHSTHRNRYLCFIQMSQILNNN 566
           IS++   M  NL++       K++T   +S+Y  +HS+H N    F  +     +N
Sbjct: 240 ISVKKPGMIENLFKEISENTKKSVTKVPISIYYFIHSSHSNFATLFTDLLDYFPSN 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,888,819
Number of Sequences: 27780
Number of extensions: 251136
Number of successful extensions: 618
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)