Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7o01
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70753-12|CAA94761.2|  585|Caenorhabditis elegans Hypothetical p...    36   0.017
AF125971-1|AAD14769.2|  469|Caenorhabditis elegans Hypothetical ...    35   0.052
U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical p...    31   0.64 
Z81051-7|CAB02868.1|  167|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    29   2.0  
Z81586-5|CAB04696.1|  484|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protei...    29   3.4  
AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal chem...    29   3.4  
U97007-4|AAB52297.2|  491|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U70857-11|AAN84874.1|  295|Caenorhabditis elegans Hypothetical p...    28   4.5  
U70857-10|AAB09175.1|  385|Caenorhabditis elegans Hypothetical p...    28   4.5  
AC006627-6|AAK85462.3|  249|Caenorhabditis elegans Hypothetical ...    28   6.0  
Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z69634-2|CAA93451.2|  926|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z35663-2|CAA84735.2|  335|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U46673-6|AAC48149.2| 1382|Caenorhabditis elegans P-glycoprotein ...    27   7.9  

>Z70753-12|CAA94761.2|  585|Caenorhabditis elegans Hypothetical
           protein F40F9.5 protein.
          Length = 585

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
 Frame = +3

Query: 324 TQEAEIQQIISHIESWRTIIQTAIPTLLVI-FMGAWSDRTGNRKICILLPIFGEFMVCVS 500
           T + ++++ I++ + +  I+ T IPTL+V   +G WSDR G RK  +L  +FG F+    
Sbjct: 116 TLQDDVEKDIANTKIYLQIMGT-IPTLIVSPLIGNWSDRNG-RKSPLLFSLFGLFINNFI 173

Query: 501 NVLSTYFFYEIPVETTMFLEAIFPAITGG 587
            + +T  +  + V    F+      + GG
Sbjct: 174 LLCATLTYETVNVYYWFFISEFMLGMFGG 202


>AF125971-1|AAD14769.2|  469|Caenorhabditis elegans Hypothetical
           protein Y4C6B.5 protein.
          Length = 469

 Score = 34.7 bits (76), Expect = 0.052
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
 Frame = +3

Query: 180 PIFAGLIIPSTLARLAIQNLNLDKACRVKSQFGDVVCDALIERKGNYTTQEAEIQQIISH 359
           P+F   ++ S L     QNL  +K C +K Q  +  C     R  +    + +IQ   +H
Sbjct: 13  PLFL-YMLGSYLNYPVFQNLIYEKECLIKYQQNETFC-----RNVSAYYDDKDIQAAANH 66

Query: 360 ---IESWRTIIQTAIPTLLVIFMGAWSDRTGNRKICILLPIFGEFMVCVSNVLSTYFFYE 530
              I S   +  + + TLL   +GA +D   + KI +++P  G  +  ++ V  +YF + 
Sbjct: 67  FYFISSLTLLCPSLVTTLL---LGAATD-YWSIKIPLIIPYIGCILGTINYVFQSYFIH- 121

Query: 531 IPVETTMFLEAIFPAITGGWVLV 599
             V   +  +A+F  + GG++ +
Sbjct: 122 TSVYFLLISDALF-GLCGGFIAI 143


>U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical
            protein C32E8.11 protein.
          Length = 1927

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 36   KMSSENTKEEINEQVPINEKDNVNNKDEFENRSFFDK 146
            K+  E  K+E   Q P  + + V  KD+++N+ FFD+
Sbjct: 1075 KIEDEEKKDE--SQTPSEKSETVVKKDDYDNKHFFDE 1109


>Z81051-7|CAB02868.1|  167|Caenorhabditis elegans Hypothetical
           protein C55A6.8 protein.
          Length = 167

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 575 GWEYRF*EHCGFDWNLIKE 519
           GW Y + EHC FD  +IK+
Sbjct: 16  GWPYHYVEHCIFDLRIIKD 34


>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = -2

Query: 527  IKEVSAQYIAHADHKFTEDWEEYANFSVARPVAPSSHEDNQKCGYGGLYNSP----P*FN 360
            I+ +S   + H   +F  D +    F V   + P   ++NQK G G +YN      P FN
Sbjct: 1870 IEHMSRTLLLHCIREFRGD-DRIRQF-VFNLIRPQGIQENQKLGAGSMYNQGWAGLPEFN 1927

Query: 359  M*NYLLDLGF 330
              ++ LD  F
Sbjct: 1928 PPSFALDSAF 1937


>Z81586-5|CAB04696.1|  484|Caenorhabditis elegans Hypothetical
           protein T05F1.7 protein.
          Length = 484

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 15  LSRDEDNKMSSENTKEEINEQVPINEKDNVNNKDEFE 125
           + ++   +M +E  KEEI  ++ I E +N    DEF+
Sbjct: 173 IHKEIQRQMENETKKEEIERRIKIFEVENSGISDEFQ 209


>AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protein
           protein.
          Length = 917

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 102 VNNKDEFENRSFFDKLCEIKSNIT 173
           V N D   N  F DKLC+++SNI+
Sbjct: 138 VPNYDAIFNLKFLDKLCQMQSNIS 161


>AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal
           chemotaxis protein 14 protein.
          Length = 917

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 102 VNNKDEFENRSFFDKLCEIKSNIT 173
           V N D   N  F DKLC+++SNI+
Sbjct: 138 VPNYDAIFNLKFLDKLCQMQSNIS 161


>U97007-4|AAB52297.2|  491|Caenorhabditis elegans Hypothetical
           protein ZC196.6 protein.
          Length = 491

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
 Frame = +3

Query: 57  KEEINEQVPINEKDNVNNKDEFENRSFFDK-LCEIKSNITVEPIFAGLIIPSTLARLAIQ 233
           KE+++  + +  +DN    D+ +N S   K + + +  + V        + S  +     
Sbjct: 214 KEDVDSSIELENEDNCQIDDDIKNTSEVRKEITKFEETVAVPDENEQSFVNS--SNFVDP 271

Query: 234 NLNLDKACRVKSQFGDVVCDALIERKGNYT 323
           N   + +   ++Q  DVV +  +E+ GN T
Sbjct: 272 NCEKETSNEDQNQQNDVVAEETMEKPGNLT 301


>U70857-11|AAN84874.1|  295|Caenorhabditis elegans Hypothetical
           protein C10G8.8b protein.
          Length = 295

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 18  SRDEDNKMSSENTKEEINEQVPINEKDNV 104
           S+D++N  +S+ TKEE +E V  +   NV
Sbjct: 250 SKDKENTENSDETKEESSEDVKEDSNQNV 278


>U70857-10|AAB09175.1|  385|Caenorhabditis elegans Hypothetical
           protein C10G8.8a protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 18  SRDEDNKMSSENTKEEINEQVPINEKDNV 104
           S+D++N  +S+ TKEE +E V  +   NV
Sbjct: 340 SKDKENTENSDETKEESSEDVKEDSNQNV 368


>AC006627-6|AAK85462.3|  249|Caenorhabditis elegans Hypothetical
           protein E01A2.5 protein.
          Length = 249

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 81  PINEKDNVNNKDEFENRSFFDKLCEIKS-NITVEPIFAGLIIPS 209
           P N+K +    D  E    F+ LCE+K  +  V+ + AG I+ S
Sbjct: 77  PKNQKSDYEKTDGDEVEDLFELLCEVKKHHPEVKGVSAGAILSS 120


>Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical
           protein F25H5.7 protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 21  RDEDNKMSSENTKEEINEQVPINEKDNVNNKDEFENRSFFDKLCEIKSNITVE 179
           +DE N  S E      N +VP  +K   N++ + E +   D L ++K   + E
Sbjct: 54  KDEKNSNSEEKKTTSSNNEVPPQKKLIGNDEVKKEKKKSEDDLLDVKKTASKE 106


>Z69634-2|CAA93451.2|  926|Caenorhabditis elegans Hypothetical
           protein B0001.2 protein.
          Length = 926

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +3

Query: 12  KLSRDEDNKMSSENTKEEINEQVPINEKDNVNNKDEFENRSFFDKLCEIKSNI 170
           K  +D ++   SEN      +  P   K NV NK   E  +   +  E  SN+
Sbjct: 331 KSEKDSEDSGDSENENSSSTDSRPSKPKKNVENKKSEEKINNSSEKKEYSSNV 383


>Z35663-2|CAA84735.2|  335|Caenorhabditis elegans Hypothetical
           protein T04A8.2 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 472 IGRSMQIFLLPVLSLQAPMKITRSVGMAVCIIVLHDS 362
           IGR++ ++  P+  + APM     +G  + +IVLH S
Sbjct: 86  IGRTL-VYFTPLCPIIAPMFYEPLIGFKIMMIVLHHS 121


>U46673-6|AAC48149.2| 1382|Caenorhabditis elegans P-glycoprotein
            related protein 10 protein.
          Length = 1382

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 207  STLARLAIQNLNLDKACRVKSQFGDVVCDAL 299
            + LA + + N++  KA  ++S F +V CDAL
Sbjct: 998  ANLASVVLANMSTIKAYNLQSHFYNVFCDAL 1028


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,216,738
Number of Sequences: 27780
Number of extensions: 308516
Number of successful extensions: 1126
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)