Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7n21
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...   158   6e-40
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    30   0.29 
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    28   1.2  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    26   6.2  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    25   8.2  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   8.2  

>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score =  158 bits (384), Expect = 6e-40
 Identities = 72/148 (48%), Positives = 101/148 (68%), Gaps = 3/148 (2%)
 Frame = +1

Query: 283 QVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQGWYIVTYALGIYHLNLFIAFLTPK 462
           ++Y+  +DR  P+   RW+  + ++A F IRI+  +GWYIV Y L IY LNLF+AFLTPK
Sbjct: 20  RLYRHWVDRTIPYTTYRWLTVSGLIALFFIRILLVRGWYIVCYTLAIYLLNLFLAFLTPK 79

Query: 463 IDPAMDL---DDDENGPALPTRASEEFRPFIRRLPEFKFWLSVTKSTLIAFCCTFVDAFN 633
            DP+++    D++     LPT   +EFRPFIRRLPEFKFW S  ++TL A   +F   F+
Sbjct: 80  FDPSVEQAMKDEEIEEGVLPTSKDDEFRPFIRRLPEFKFWYSSMRATLFALVASFFRIFD 139

Query: 634 IPVFWPILVMYFITLFCITMKRQIKHMI 717
           +PVFWPILV+Y++ L     +RQI+HM+
Sbjct: 140 VPVFWPILVVYYLVLSFFCFRRQIQHML 167


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +2

Query: 152  YSIFVQIIWSKPMRKTSKI*WTEMIYLLKLQEKEYCLKVGHEYRRFIRVH*TDGPLTQ 325
            ++ +V ++ S  +   S+I WT +  L  + E E+   V   Y  F+RV  TD    Q
Sbjct: 1637 FNSYVLVMNSDDLLSYSQILWTAIACLTTIHEDEFIESVKIAYAYFLRVEETDSATQQ 1694


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 460 KIDPAMDLDDDENGPALPTRASEEFRPFIRRLPEFKFWLSVTKSTLIA 603
           K   +M  DDD+       R S+ +  ++R++  F FW S    +LIA
Sbjct: 353 KTHASMKDDDDKPTNFHDIRLSDLYAEYLRQVATFDFWTSKEYESLIA 400


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 396 VYCHICVGYLPFKLVHCIL 452
           VYCH C  Y P +  HC L
Sbjct: 182 VYCHTCHLYRPPRASHCHL 200


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +1

Query: 259 SQGWTRISQVYQSTLDRWTPH-AKTRWVGSALV 354
           ++GW+   + Y     RW PH  +  W+   LV
Sbjct: 297 AEGWSSDEEQYAMKNRRWNPHMGQYEWIEDFLV 329


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 594 FNSFLLYFCGCFQYSSILAYSSYVFHNIILYYYEETNQAYD 716
           FNSF L F     +  I   S  +  N ILY  +  +Q YD
Sbjct: 340 FNSFKLCFVDETNFPIISTPSLVISSNSILYPKDSLDQIYD 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,005,930
Number of Sequences: 5004
Number of extensions: 65157
Number of successful extensions: 190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)