Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7n06
(215 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 24 2.4
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma... 23 5.5
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 23 5.5
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple... 23 7.2
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 23 7.2
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo... 23 7.2
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 22 9.6
SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyce... 22 9.6
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23... 22 9.6
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom... 22 9.6
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 22 9.6
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 164 IRQKNTLKNLRRKILRQKIRHKI 96
+ + N LKNL+RK L +K+ I
Sbjct: 391 LEEVNRLKNLKRKELEEKLNQVI 413
>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 248
Score = 23.0 bits (47), Expect = 5.5
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +1
Query: 4 YVNYYFFSIVSSLHVNFF*DYQNIVDIFQEFILCLIFCLKIFRLKFLRVFFC 159
+++ FF + S +H+ + +N +F+E L F RL + F C
Sbjct: 194 WISSGFFLLFSLIHLGLWTIERNKQKLFEETSLSFSFITTKLRLIETQYFIC 245
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 144 KSIFLSDCMYIFCKSKFDLERKK 212
KSIF + C ++FC + RKK
Sbjct: 160 KSIFAAKCGHLFCSTCAKELRKK 182
>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 442
Score = 22.6 bits (46), Expect = 7.2
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +1
Query: 67 QNIVDIFQEFILCL--IFCLKIFRLKFLRV 150
QNI ++ I C+ + CL FRLK +R+
Sbjct: 171 QNINPSKKDAIFCIANLLCLLYFRLKQIRL 200
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 22.6 bits (46), Expect = 7.2
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +1
Query: 148 VFFCLIVCTFFVR 186
+FFC VC+ F++
Sbjct: 561 MFFCAFVCSMFIK 573
>SPCC191.09c |gst1||glutathione S-transferase
Gst1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 229
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 147 SIFLSDCMYIFCKSKFDLERK 209
+I+ SD + I+ K+D ERK
Sbjct: 67 TIWESDAILIYLADKYDTERK 87
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 119 RQKIRHKINS*NMST 75
R+K RHKIN+ M+T
Sbjct: 541 REKRRHKINATGMTT 555
>SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 213
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 76 VDIFQEFILCLIFCL 120
+DIF EF+L I C+
Sbjct: 13 IDIFGEFLLVSIHCI 27
>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 22.2 bits (45), Expect = 9.6
Identities = 6/14 (42%), Positives = 12/14 (85%)
Frame = -3
Query: 201 LNQIYSYKKCTYNQ 160
L +Y+++KCT+N+
Sbjct: 34 LGGLYTFEKCTFNK 47
>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 266
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +1
Query: 115 CLKIFRLKFLRVFFCLIVCTFFV 183
C K R+ FLR + ++ FV
Sbjct: 50 CAKSIRMAFLRKVYAILTAQLFV 72
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +1
Query: 55 F*DYQNIVDIFQEFILCLIFCLK 123
F D++ ++ + Q+F + L+F LK
Sbjct: 403 FLDFEALIPLLQQFQVKLVFFLK 425
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 656,331
Number of Sequences: 5004
Number of extensions: 9000
Number of successful extensions: 27
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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