Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7n06
         (215 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022984-6|AAB69956.2|  357|Caenorhabditis elegans Serpentine re...    28   0.78 
Z96047-7|CAB09413.1|  561|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine re...    27   2.4  
U80451-2|AAB37837.1|  223|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z81146-3|CAB03524.1|  496|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical pr...    25   7.3  
AC024882-12|AAF60928.2|  347|Caenorhabditis elegans Seven tm rec...    25   7.3  
U80444-1|AAB37787.2|  383|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>AF022984-6|AAB69956.2|  357|Caenorhabditis elegans Serpentine
           receptor, class w protein109 protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +1

Query: 34  SSLHVNFF*DYQNIVDIFQEFILCLIFCLKIFRLKFLRVFFCLIVCTFFVRVNLI 198
           S +H NF   +QN++++ +++   + F L I     L +   +I+    +R++ I
Sbjct: 3   SEIHFNFIQKFQNVLNLLEKYAFLVQFILAIISF-ILNLLHFVIITRKSIRISSI 56


>Z96047-7|CAB09413.1|  561|Caenorhabditis elegans Hypothetical
           protein DY3.4a protein.
          Length = 561

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = -1

Query: 194 KFTLTKNVHTIRQKNTLKNLRRKILRQKIRHKINS*NMST 75
           K+   ++ +TI +K+   +L R I ++K R K+N  +MST
Sbjct: 18  KYDKRRHWNTIIRKSAHLSLVRNIFKKKRRQKLNYRHMST 57


>AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 23 protein.
          Length = 293

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 52  FF*DYQNIVDIFQEFILCLIFCLKIFRLKFLRVFFCLIVCTF 177
           F+ +++++V      ILCLIF   IF+  F+  +FC    TF
Sbjct: 117 FYRNHRSLVT--NSVILCLIFGYAIFQYSFI-YYFCNFELTF 155


>U80451-2|AAB37837.1|  223|Caenorhabditis elegans Hypothetical
           protein F11G11.5 protein.
          Length = 223

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 97  ILCLIFCLKIFRLKFLRVFFCLIVCT 174
           +LCLI  L IF   F  +F C + CT
Sbjct: 187 LLCLIM-LTIFTFPFGLIFLCCVPCT 211


>Z81146-3|CAB03524.1|  496|Caenorhabditis elegans Hypothetical
           protein K10D11.5 protein.
          Length = 496

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 192 IYSYKKCTYNQT 157
           +YS  KCTYNQT
Sbjct: 421 VYSGSKCTYNQT 432


>Z66495-6|CAA91275.2|  547|Caenorhabditis elegans Hypothetical
           protein C36A4.8 protein.
          Length = 547

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +3

Query: 144 KSIFLSDCMYIFCKSKFD--LERKKK 215
           K   LS C +IFC+S  +   ERK+K
Sbjct: 29  KDPILSTCFHIFCRSCINACFERKRK 54


>AC024882-12|AAF60928.2|  347|Caenorhabditis elegans Seven tm
           receptor protein 163 protein.
          Length = 347

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
 Frame = +1

Query: 85  FQEFILCLIFCL----KIFRLKFLRVFFCLIVCTFFV 183
           F   IL L+ C     KI   K+L ++FC+    F V
Sbjct: 24  FSNIILILLICTNSPKKIGSYKYLMIYFCVFAIFFSV 60


>U80444-1|AAB37787.2|  383|Caenorhabditis elegans Hypothetical
           protein F26B1.5 protein.
          Length = 383

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 28  IVSSLHVNFF*DYQNIVDIFQEFI--LCLIFCLKIFRLKFL 144
           IV+S   N F    + VD     I  +CL+F LK+  LKF+
Sbjct: 90  IVTSYSSNRFVFLGDYVDRGNHSIECICLVFALKVLDLKFV 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,614,950
Number of Sequences: 27780
Number of extensions: 50445
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 12,740,198
effective HSP length: 51
effective length of database: 11,323,418
effective search space used: 226468360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)