Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7m13
         (223 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   1.8  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    21   2.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   3.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    19   5.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    19   9.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    19   9.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    19   9.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    19   9.5  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 1.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 198 ISKLIQKNIYQPLCNNHVNRN*FRTYN 118
           IS L  K I+    NN+ N N +  YN
Sbjct: 82  ISSLSNKTIHN---NNNYNNNNYNNYN 105


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 2.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 192 KLIQKNIYQPLCNNHVNRN*FRTYN 118
           K+I  N   PL NN+   N +  YN
Sbjct: 80  KIISNN--NPLSNNYNYNNNYNNYN 102


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 3.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 6   CSA*CMCYNIR 38
           C A C CYN R
Sbjct: 761 CPAGCKCYNDR 771


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = -2

Query: 180 KNIYQPLCNNHVNR 139
           +   QP+C N +N+
Sbjct: 352 RGFLQPVCQNEMNK 365


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 204 SYISKLIQKN 175
           +Y+ KLI+KN
Sbjct: 160 TYLDKLIEKN 169


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 222 FFFIFFSYISKLI 184
           FF + F+YI  LI
Sbjct: 413 FFIVIFTYIIILI 425


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -2

Query: 174 IYQPLCNNHVNR 139
           IY+ LC  H  R
Sbjct: 46  IYESLCGRHEKR 57


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -2

Query: 174 IYQPLCNNHVNR 139
           IY+ LC  H  R
Sbjct: 46  IYESLCGRHEKR 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,121
Number of Sequences: 438
Number of extensions: 428
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3407265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)