Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7m11
         (128 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    27   0.45 
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   1.4  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    22   9.7  

>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 26.6 bits (56), Expect = 0.45
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 114 LQPLDLDIXSMASSKSFLSMVPLPLVSKKAVKTC 13
           L  LDL I S+ +  SF   +P P   ++++  C
Sbjct: 201 LPQLDLSISSLYTLPSFFPQLPTPSFHRRSINLC 234


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 15  TFSPLSSTPMAAEPLIKRTLNLPLXGYPNREAGVL 119
           TF+  SS P +  P  +R +++ +   PN + G++
Sbjct: 876 TFTVESSQPFSLSPGERREIHIKIRAKPNSQEGLI 910


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -3

Query: 105 LDLDIXSMASSKSFLSMVPLPLVSKKAVKTCNN 7
           L+L +  +  +++F  +  LP+V+K  +  C N
Sbjct: 141 LELAMYKVQVNQTFSPLQDLPIVAKTKLHNCPN 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 519,217
Number of Sequences: 5004
Number of extensions: 6214
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 23
effective length of database: 2,247,386
effective search space used: 42700334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)