Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7m11
         (128 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0048 - 12354566-12354639,12355563-12355665,12355781-123559...    29   0.52 
07_03_1286 + 25482632-25482685,25483948-25484145,25484242-254844...    27   2.8  
09_06_0239 - 21794691-21795986                                         26   3.7  
03_06_0235 + 32539025-32539886,32540330-32540473,32540595-325407...    26   3.7  
03_02_0663 + 10256898-10258915,10259162-10259248,10259463-102597...    25   8.5  

>10_07_0048 -
           12354566-12354639,12355563-12355665,12355781-12355933,
           12356105-12356132,12356414-12356450,12356563-12356746
          Length = 192

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 32  FDTNGSGTIDKKDFELAIEXI 94
           FDT+GSGTID K+  +A+  +
Sbjct: 56  FDTDGSGTIDPKELNVAMRAL 76


>07_03_1286 +
           25482632-25482685,25483948-25484145,25484242-25484464,
           25484762-25484958,25485150-25485237,25487103-25487197,
           25487585-25487705,25487795-25487831,25487924-25487951,
           25488175-25488327,25488666-25488768,25488868-25488932
          Length = 453

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 32  FDTNGSGTIDKKDFELAIEXI 94
           FDT+ SGTID K+  +A+  +
Sbjct: 320 FDTDNSGTIDAKELNVAMRAL 340


>09_06_0239 - 21794691-21795986
          Length = 431

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 15  TFSPLSSTPMAAEPLIKRTLNLPLXG 92
           T +P +STPM A+P++K    + L G
Sbjct: 243 TTTPAASTPMVADPVLKSGYFVKLVG 268


>03_06_0235 +
           32539025-32539886,32540330-32540473,32540595-32540747,
           32540871-32540986,32541254-32541421,32541534-32541758,
           32541884-32542015
          Length = 599

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +2

Query: 14  HVFTAF--FDTNGSGTIDKKDFELAIE 88
           H+F AF  FD +GSG I   + +LA E
Sbjct: 510 HLFAAFQYFDKDGSGYITADELQLACE 536


>03_02_0663 + 10256898-10258915,10259162-10259248,10259463-10259724,
            10259802-10260111,10260535-10260645,10260861-10261090
          Length = 1005

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 5    KLLHVFTAFFDTNGSGTIDKKDFELAI 85
            +LLH+  AFFD+ G      +D E A+
Sbjct: 955  QLLHLRAAFFDSMGDNANTLRDCEAAL 981


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,371,823
Number of Sequences: 37544
Number of extensions: 40755
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 14,793,348
effective HSP length: 23
effective length of database: 13,929,836
effective search space used: 264666884
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)