Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7m03
(579 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 205 2e-53
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 111 3e-25
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 111 3e-25
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 105 3e-23
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 105 3e-23
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 85 3e-17
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 84 8e-17
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 76 2e-14
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 76 2e-14
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 75 5e-14
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 71 8e-13
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 63 1e-10
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 61 5e-10
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 60 8e-10
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 60 8e-10
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 56 2e-08
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 54 6e-08
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 53 1e-07
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 48 5e-06
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 46 3e-05
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 42 3e-04
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 41 6e-04
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 40 0.001
Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical pr... 31 0.59
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 29 2.4
AL032639-5|CAA21629.1| 342|Caenorhabditis elegans Hypothetical ... 27 9.6
AF003137-9|AAB93646.3| 883|Caenorhabditis elegans Hypothetical ... 27 9.6
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 205 bits (501), Expect = 2e-53
Identities = 95/127 (74%), Positives = 106/127 (83%)
Frame = +1
Query: 196 LPRRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYP 375
LPRRIIKETQRL+ +PVPGISA P E+NARYFHV++ GP+DS +YP
Sbjct: 5 LPRRIIKETQRLLADPVPGISANPDESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYP 64
Query: 376 MSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAN 555
M+APKVRF+TKIYHPNID+LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP+DPLA
Sbjct: 65 MAAPKVRFMTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPEDPLAT 124
Query: 556 DVAELWK 576
DVAE WK
Sbjct: 125 DVAEQWK 131
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 111 bits (267), Expect = 3e-25
Identities = 56/125 (44%), Positives = 73/125 (58%)
Frame = +1
Query: 202 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 381
+RI KE Q L ++P SA P + ++ + GP +S DYP
Sbjct: 4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63
Query: 382 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 561
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 562 AELWK 576
A ++K
Sbjct: 124 ARIYK 128
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 111 bits (267), Expect = 3e-25
Identities = 56/125 (44%), Positives = 73/125 (58%)
Frame = +1
Query: 202 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 381
+RI KE Q L ++P SA P + ++ + GP +S DYP
Sbjct: 4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63
Query: 382 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 561
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 562 AELWK 576
A ++K
Sbjct: 124 ARIYK 128
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 105 bits (251), Expect = 3e-23
Identities = 44/125 (35%), Positives = 76/125 (60%)
Frame = +1
Query: 202 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 381
RR++++ ++L ++P G+S P+E N + I+ GP+++ +YP
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 382 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 561
P V+FI+K++HPN+ G ICLDIL+++WSP + +L SIQ+LL PNP+ P +
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLA 126
Query: 562 AELWK 576
A+L++
Sbjct: 127 AQLYQ 131
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 105 bits (251), Expect = 3e-23
Identities = 44/125 (35%), Positives = 76/125 (60%)
Frame = +1
Query: 202 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 381
RR++++ ++L ++P G+S P+E N + I+ GP+++ +YP
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 382 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 561
P V+FI+K++HPN+ G ICLDIL+++WSP + +L SIQ+LL PNP+ P +
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLA 126
Query: 562 AELWK 576
A+L++
Sbjct: 127 AQLYQ 131
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 85.4 bits (202), Expect = 3e-17
Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +1
Query: 301 VTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNID-RLGRICLDILKDKWSP 477
+ GP D+ YP S P V+F TKI+HPN+ + G ICLDILKD+W+
Sbjct: 43 IRGPPDTPYAGGMFDLDIKIPDQYPFSPPNVKFSTKIWHPNVSSQTGVICLDILKDQWAA 102
Query: 478 ALQIRTVLLSIQALLSAPNPDDP 546
+L +RTVLLSIQAL+ P P DP
Sbjct: 103 SLTLRTVLLSIQALMCTPEPKDP 125
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 83.8 bits (198), Expect = 8e-17
Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Frame = +1
Query: 202 RRIIKETQRLMQEPVPGISAVP-SETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPM 378
+R++ E + L P GI A P E N + ++TGPE++ DYP+
Sbjct: 7 KRLMTEYKELTTRPPEGIIAAPIDEDNFFEWECLITGPEETCFANGVFPARITFPQDYPL 66
Query: 379 SAPKVRFITKIYHPNIDRLGRICLDIL-------------KDKWSPALQIRTVLLSIQAL 519
S PK+RF I+HPNI GR+C+ IL ++WSP I +LLS+ ++
Sbjct: 67 SPPKMRFTCGIFHPNIYADGRVCISILHAPGDDPTGYELSNERWSPVQSIEKILLSVVSM 126
Query: 520 LSAPNPDDPLANDVAELWK 576
L+ PN + P A++W+
Sbjct: 127 LAEPNDESPANVSAAKMWR 145
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 76.2 bits (179), Expect = 2e-14
Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 14/133 (10%)
Frame = +1
Query: 214 KETQRLMQEPVPGISAVPSETNARY-FHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPK 390
K+ + + PV G SA + N Y + V+V GP D+ DYP PK
Sbjct: 10 KQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPK 69
Query: 391 VRFITKIYHPNIDRLGRICLDILKD-------------KWSPALQIRTVLLSIQALLSAP 531
++FI++I+HPNID+ G +C+ IL D +W P + T+LLS+ ++L+ P
Sbjct: 70 MKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDP 129
Query: 532 NPDDPLANDVAEL 570
N + P D A++
Sbjct: 130 NFESPANVDAAKM 142
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 76.2 bits (179), Expect = 2e-14
Identities = 50/142 (35%), Positives = 66/142 (46%), Gaps = 17/142 (11%)
Frame = +1
Query: 172 DRIFKMA-ALPRRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXX 348
D++ +A A R KE GI E N + GPE +
Sbjct: 13 DKMSNLALARVTRKCKEVANASDITEAGIHVEIKENNLMDIKGFIKGPEGTPYAGGTFEI 72
Query: 349 XXXXXXDYPMSAPKV---------------RFITKIYHPNID-RLGRICLDILKDKWSPA 480
YP PKV +F+T+I+HPNI + G ICLDILKDKW+ +
Sbjct: 73 KVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTAS 132
Query: 481 LQIRTVLLSIQALLSAPNPDDP 546
L +RTVLLS+QA+L +P P DP
Sbjct: 133 LTLRTVLLSLQAMLCSPEPSDP 154
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 74.5 bits (175), Expect = 5e-14
Identities = 43/124 (34%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Frame = +1
Query: 202 RRIIKETQRLMQEPVPGISAVP-SETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPM 378
RR+ KE L V V ETN + V++ P+ DYP
Sbjct: 5 RRLQKELGDLKNCGVKAYENVECEETNLLKWTVLLI-PDKEPYNKGAFKVGITFPVDYPF 63
Query: 379 SAPKVRFITKIYHPNIDRLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLAN 555
PKV F TKIYHPN+D G+ CL I+ + W PA + V++++ +L++ P P P+
Sbjct: 64 KPPKVAFETKIYHPNVDEEGKFCLPIVTAENWKPATKTEQVMMALLSLINEPEPSHPIRA 123
Query: 556 DVAE 567
DVAE
Sbjct: 124 DVAE 127
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 70.5 bits (165), Expect = 8e-13
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 13/138 (9%)
Frame = +1
Query: 202 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 381
R + E + L +PV G + +E N + V + GP + +YP S
Sbjct: 13 RALTMELKNLQSQPVEGFTIDVNEDNLFVWTVGIYGPPKTLYQGGYFKASIRFPSNYPYS 72
Query: 382 APKVRFITKIYHPNIDRLGRICLDILK-------------DKWSPALQIRTVLLSIQALL 522
P ++F TK++HPN+ G +C+ IL ++W+P +RT+LLS+ +LL
Sbjct: 73 PPSMKFTTKVWHPNVYENGDLCISILHSPIDDPQSGELACERWNPTQSVRTILLSVISLL 132
Query: 523 SAPNPDDPLANDVAELWK 576
+ PN P D + +++
Sbjct: 133 NEPNTSSPANVDASVMYR 150
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 63.3 bits (147), Expect = 1e-10
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Frame = +1
Query: 193 ALPRRIIKETQRLMQEPVPGISAVPSETN--ARYFHVIVTGPEDSXXXXXXXXXXXXXXX 366
A RR++KE +L E G+ + T+ + + + V G E +
Sbjct: 4 AATRRLMKELAQLKSEAPEGLLVDNTSTSNDLKQWKIGVVGAEGTLYAGEVFMLQFTFGP 63
Query: 367 DYPMSAPKVRFITKIY--HPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSA 528
YP ++P+V F+ + HP+I G ICL IL D W+PAL +++V LSI ++LS+
Sbjct: 64 QYPFNSPEVMFVGETIPAHPHIYSNGHICLSILSDDWTPALSVQSVCLSILSMLSS 119
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 61.3 bits (142), Expect = 5e-10
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +1
Query: 289 FHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNIDRL-GRICLDILKD 465
F V GP+D+ YP +P + F+ KI+HPNID G +CLD++
Sbjct: 35 FIVRFHGPKDTAYENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGTVCLDVINQ 94
Query: 466 KWSPALQIRTVL-LSIQALLSAPNPDDPLANDVAELW 573
W+ + + + LL+ PN DPL + A L+
Sbjct: 95 AWTALYDLTNIFDTFLPQLLTYPNAADPLNGEAARLY 131
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 60.5 bits (140), Expect = 8e-10
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Frame = +1
Query: 367 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPD 540
D+P + PK +F ++HPN+ G +CL +L + W P++ I+ +L+ IQ LL+ PN +
Sbjct: 67 DFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIE 126
Query: 541 DPLANDVAELW 573
DP + +++
Sbjct: 127 DPAQAEAYQIY 137
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 60.5 bits (140), Expect = 8e-10
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Frame = +1
Query: 367 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPD 540
D+P + PK +F ++HPN+ G +CL +L + W P++ I+ +L+ IQ LL+ PN +
Sbjct: 67 DFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIE 126
Query: 541 DPLANDVAELW 573
DP + +++
Sbjct: 127 DPAQAEAYQIY 137
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 56.0 bits (129), Expect = 2e-08
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Frame = +1
Query: 202 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 381
RR+ K+ +LMQ+PV GI A+P+E N +H + G D+ ++P S
Sbjct: 22 RRLQKDYAKLMQDPVDGIKALPNEDNILEWHYCLRGSPDTPFYGGYYWGKVIFKENFPWS 81
Query: 382 APKVRFITKIYHPNIDRLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNPDDPLA 552
P + IT + R+CL D + W+P + +L+ + + + N + P A
Sbjct: 82 PPAITMITP--NGRFQTNTRLCLSISDYHPESWNPGWTVSAILIGLHSFM---NENSPAA 136
Query: 553 NDVA 564
+A
Sbjct: 137 GSIA 140
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 54.4 bits (125), Expect = 6e-08
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Frame = +1
Query: 199 PRRIIKET-QRLMQEP-VPGISAVPSETNA-RYFHVIVTGPEDSXXXXXXXXXXXXXXXD 369
P ++I T Q L +EP V + V + + I+ G E++
Sbjct: 348 PMKVISVTPQNLPEEPNVSETNIVTVKFRLPKGIQGIIKGVEETPYEGGIFELDIKIGES 407
Query: 370 YPMSAPKVRFITKIYHPNIDRL-GRICL-DILKDKWSPALQIRTVLLSIQALLSAPNPDD 543
YP AP V+FITKI+HP++ G ICL D+ W ++ I VL+ IQ+ +S N +
Sbjct: 408 YPFKAPTVKFITKIWHPSVSPFDGTICLHDVDNGVWPVSMTIYKVLIVIQSWMSNFNEKE 467
Query: 544 PLANDVAE 567
P+ ++ E
Sbjct: 468 PIDVEILE 475
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 53.2 bits (122), Expect = 1e-07
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Frame = +1
Query: 202 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 381
+R+ K+ QRL++EPVP + A P ETN + I+ G + D+P
Sbjct: 11 QRLKKDYQRLLKEPVPFMKAAPLETNILEWRYIIIGAPKTPYEGGIYMGKLLFPKDFPFK 70
Query: 382 APKVRFITKIYHPNIDRLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNP 537
P + +T + R+CL D D W+PA + T++ + + ++ P
Sbjct: 71 PPAILMLTP--NGRFQTNTRLCLSISDYHPDTWNPAWTVSTIITGLMSFMNDNQP 123
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 48.0 bits (109), Expect = 5e-06
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +1
Query: 367 DYPMSAPKVRFITKIYHPNIDRLG-RICLD-ILKDKWSPALQIRTVLLSIQALLSAPNPD 540
+YP P ++F +YHPN+D + +C +L++ W P + VLL++ LL+ P+
Sbjct: 71 EYPFKPPYLKFCHNVYHPNVDPVTCELCSPMLLQENWKPETTMEDVLLNLIVLLNEPDLS 130
Query: 541 DPLANDVA 564
P+ D A
Sbjct: 131 RPVNIDAA 138
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 45.6 bits (103), Expect = 3e-05
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Frame = +1
Query: 295 VIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITK-----IYHPNIDRLGRICLDIL 459
V+++GP+D+ YP S PK F+T ++PN+ G+ICL IL
Sbjct: 447 VLISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSIL 506
Query: 460 -------KDKWSPALQIRTVLLSIQALL 522
++KW+P + VL+SIQ ++
Sbjct: 507 GTWEGRPEEKWNPYCSLMQVLVSIQEVI 534
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 41.9 bits (94), Expect = 3e-04
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Frame = +1
Query: 262 VPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNIDRLGR 441
VPS + + VT P++ +Y P V+ +TK++HPNI+ G
Sbjct: 52 VPSTSCLHELELTVT-PQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGS 110
Query: 442 ICLDILKDK------WSPALQIRTVLLSIQALLS-APNPDDPLANDVAELW 573
ICL IL+ W P + V+ + +L + + +D L A++W
Sbjct: 111 ICLSILRQNSLDQYGWRPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMW 161
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 41.1 bits (92), Expect = 6e-04
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Frame = +1
Query: 202 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 381
RR++KE L Q P A P E N +H + G + DYPM
Sbjct: 13 RRLMKEAMELRQ-PTEMYHAQPMEDNLFEWHFTIRGTLGTDFEGGIYHGRIIFPADYPMK 71
Query: 382 APKVRFITKIYHPNIDRLGRICLDIL---KDKWSPALQIRTVLLSIQALL 522
P + +T +++ ++CL I + W P+ IRT LL++ L
Sbjct: 72 PPNLILLTPNGRFELNK--KVCLSISGYHPETWLPSWSIRTALLALIGFL 119
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 370 YPMSAPKVRFITKIYHPNIDRLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPN 534
+P+ P F T ++HPN+D G I L +L ++ WS ++ +L I LL+ P+
Sbjct: 97 WPIIPPICEFKTPLHHPNVDLRGSIYLKMLEQEHWSSETSLKKLLREISNLLATPD 152
>Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical
protein F26H9.7 protein.
Length = 219
Score = 31.1 bits (67), Expect = 0.59
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +1
Query: 211 IKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSA-P 387
+ ++ L + V G ET FHVI+ GP S S P
Sbjct: 38 MNRSRHLQGKKVNGCIMRIDETKQLLFHVIIDGPVGSIYEGGTFFADINIQPYQNHSLIP 97
Query: 388 KVRFITKIYHPNIDRLG 438
+V F T I+HPN+ + G
Sbjct: 98 RVCFHTFIFHPNLGKYG 114
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +1
Query: 367 DYPMSAPKVRFITKIYHPNIDRLGRIC----LDILKDKWSPALQIRTVLLSIQ 513
+YP P VRF TK++ +++ + L L++ WS + I+TVL I+
Sbjct: 67 NYPREPPTVRFTTKVHMVGVNQSNGVIDKRNLTTLRN-WSNSYMIKTVLEDIR 118
>AL032639-5|CAA21629.1| 342|Caenorhabditis elegans Hypothetical
protein Y38F1A.4 protein.
Length = 342
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -1
Query: 147 DYSYNCIKYLIILALNVLTTLVEARFLILMNYNSILSTKLQ*TRLQKR 4
D +Y+ I Y + AL + TL+ A LIL +S KL T++ KR
Sbjct: 86 DSAYDVIVYPAVYAL-ITPTLIAAADLILCVQRVAVSRKLGETKVSKR 132
>AF003137-9|AAB93646.3| 883|Caenorhabditis elegans Hypothetical
protein C27A12.9 protein.
Length = 883
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 101 FSANIIRYFIQLYE*SLPFDKLRSTAYLKWQPY 199
+ A ++RYF+Q + +KLRSTA +P+
Sbjct: 500 YEAQVVRYFLQSLVTLVFLEKLRSTALRPRKPF 532
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,372,356
Number of Sequences: 27780
Number of extensions: 240653
Number of successful extensions: 524
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -