Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7l20
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo...    62   9e-11
SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.46 
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    29   0.61 
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    29   0.81 
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    28   1.1  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   5.7  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.6  
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...    25   10.0 
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   10.0 

>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 61.7 bits (143), Expect = 9e-11
 Identities = 44/140 (31%), Positives = 72/140 (51%)
 Frame = +3

Query: 252 TENEDHQYEQNVKDVILERALEFVSQTGWSVESLSAGAKSAGYPTITHGLFPNGGGDLIH 431
           +EN +       K +ILE ALE V Q G++ +++  G ++ GY  ++  LFP+G  DLI 
Sbjct: 36  SENYETSKISGKKALILENALEHVPQLGFTEDAIVQGGQALGYSNLSKALFPSGPMDLIS 95

Query: 432 YFNIKCNQQLAEQMKLWPQEDLKGGSKVPAKFIENAIVTRLLMIKPYKSTWPKAMAIQTL 611
           YF +K    L+    L P   L    +   + ++  I +RL   +      P+ +AI T 
Sbjct: 96  YFFLKQRYALS---SLKPH--LTTIPETSGRVVQ-LIWSRLQGNRDIVQHLPQMIAICTY 149

Query: 612 PNNVPNGLATLLSLVDDICY 671
           P+N+   L++L  L D+I Y
Sbjct: 150 PSNLRKSLSSLAELSDEILY 169


>SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 103

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 16/58 (27%), Positives = 33/58 (56%)
 Frame = +3

Query: 450 NQQLAEQMKLWPQEDLKGGSKVPAKFIENAIVTRLLMIKPYKSTWPKAMAIQTLPNNV 623
           NQ++ + + LWP+++L+     P K ++ +I  RL  + P ++   +  A+  L +NV
Sbjct: 4   NQKITKAVALWPKDELRPWLSFP-KTLDTSIRARLQKMPPQQAN-KQLNALNNLLDNV 59


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +3

Query: 87  RHWNMSNLQKTLRLFRTQHRFILPLSSVNIRNIQGTVKDYNHSEVRTDIKIASVVTENED 266
           R + + NL+KT  L RT   F+L    ++ RN      DY H     + K +  + +  D
Sbjct: 149 RDFYIKNLEKTEDLIRTDSHFVLNKELLSFRN------DYEHRRKHYE-KYSQCLNKQLD 201

Query: 267 HQYEQNVKDV 296
           H +   V  V
Sbjct: 202 HFFSYKVTTV 211


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 150 ILPLSSVNIRNIQGTVKDYNHSEVRTDIKIASVVTEN 260
           +LP+ S  +R+   ++ D +H ++RT+  +  V  EN
Sbjct: 303 VLPMFSAKLRDYTQSLFDSSHIKIRTNTALKKVTAEN 339


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
            zf-fungal binuclear cluster type |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 977

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 420  DLIHYFNIKCNQQLAEQMKLWPQEDLK 500
            DL+ YF    N  L +   LWP +DL+
Sbjct: 925  DLMSYFGFAKNSDLQQWNGLWPSDDLR 951


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 381 DSQLILHLHSKTLLTI 334
           DSQL LHLHS+ + T+
Sbjct: 271 DSQLFLHLHSRIVQTL 286


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 216 EVRTDIKIASVVTENEDHQYEQNVKD 293
           E    +    ++TE  DH +EQ +KD
Sbjct: 195 ETGLSVTAIPIITETLDHAHEQEIKD 220


>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 111 QKTLRLFRTQHRFILPLSSVNIRNIQGTVKD 203
           QK  ++  T HR  + L+S N+RN++    D
Sbjct: 8   QKEQQIPSTVHRIRITLTSRNVRNLEKVCSD 38


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +2

Query: 545 NKATHDKTIQEYMA*GNGNTNSSKQRSKWLSYFIIVS 655
           N+  +  + + +   GNGN  + + R KWL   + ++
Sbjct: 260 NERNNSNSPRNFSTHGNGNGENGQPRRKWLEEKVYIN 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,628
Number of Sequences: 5004
Number of extensions: 52388
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)