Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7l20
(675 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032627-7|CAD56256.1| 306|Caenorhabditis elegans Hypothetical ... 29 4.0
AL032627-6|CAD56255.1| 331|Caenorhabditis elegans Hypothetical ... 29 4.0
AL032627-5|CAD45607.2| 314|Caenorhabditis elegans Hypothetical ... 29 4.0
AL032627-4|CAB54382.2| 327|Caenorhabditis elegans Hypothetical ... 29 4.0
AL032627-3|CAB54381.2| 325|Caenorhabditis elegans Hypothetical ... 29 4.0
AB081596-1|BAC19843.1| 325|Caenorhabditis elegans cyclic AMP-re... 29 4.0
AB081595-1|BAC19842.1| 306|Caenorhabditis elegans cyclic AMP-re... 29 4.0
Z73899-8|CAA98079.2| 669|Caenorhabditis elegans Hypothetical pr... 28 7.0
U80445-3|AAK68258.1| 85|Caenorhabditis elegans Antibacterial f... 28 7.0
AB029810-1|BAA89490.1| 85|Caenorhabditis elegans ABF-2 protein. 28 7.0
AF078157-17|AAG24072.1| 1062|Caenorhabditis elegans Hypothetical... 27 9.2
>AL032627-7|CAD56256.1| 306|Caenorhabditis elegans Hypothetical
protein Y41C4A.4e protein.
Length = 306
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 330 TGWSVESLSAGAKSAGYPTITHGLFPNGGGDL 425
T W LS G S+ PT+T G GGG L
Sbjct: 207 TDWQSPMLSGGYSSSPSPTMTGGSMRMGGGPL 238
>AL032627-6|CAD56255.1| 331|Caenorhabditis elegans Hypothetical
protein Y41C4A.4d protein.
Length = 331
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 330 TGWSVESLSAGAKSAGYPTITHGLFPNGGGDL 425
T W LS G S+ PT+T G GGG L
Sbjct: 232 TDWQSPMLSGGYSSSPSPTMTGGSMRMGGGPL 263
>AL032627-5|CAD45607.2| 314|Caenorhabditis elegans Hypothetical
protein Y41C4A.4c protein.
Length = 314
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 330 TGWSVESLSAGAKSAGYPTITHGLFPNGGGDL 425
T W LS G S+ PT+T G GGG L
Sbjct: 215 TDWQSPMLSGGYSSSPSPTMTGGSMRMGGGPL 246
>AL032627-4|CAB54382.2| 327|Caenorhabditis elegans Hypothetical
protein Y41C4A.4b protein.
Length = 327
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 330 TGWSVESLSAGAKSAGYPTITHGLFPNGGGDL 425
T W LS G S+ PT+T G GGG L
Sbjct: 228 TDWQSPMLSGGYSSSPSPTMTGGSMRMGGGPL 259
>AL032627-3|CAB54381.2| 325|Caenorhabditis elegans Hypothetical
protein Y41C4A.4a protein.
Length = 325
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 330 TGWSVESLSAGAKSAGYPTITHGLFPNGGGDL 425
T W LS G S+ PT+T G GGG L
Sbjct: 226 TDWQSPMLSGGYSSSPSPTMTGGSMRMGGGPL 257
>AB081596-1|BAC19843.1| 325|Caenorhabditis elegans cyclic
AMP-response element bindingprotein 1 gamma 2 protein.
Length = 325
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 330 TGWSVESLSAGAKSAGYPTITHGLFPNGGGDL 425
T W LS G S+ PT+T G GGG L
Sbjct: 226 TDWQSPMLSGGYSSSPSPTMTGGSMRMGGGPL 257
>AB081595-1|BAC19842.1| 306|Caenorhabditis elegans cyclic
AMP-response element bindingprotein 1 beta protein.
Length = 306
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 330 TGWSVESLSAGAKSAGYPTITHGLFPNGGGDL 425
T W LS G S+ PT+T G GGG L
Sbjct: 207 TDWQSPMLSGGYSSSPSPTMTGGSMRMGGGPL 238
>Z73899-8|CAA98079.2| 669|Caenorhabditis elegans Hypothetical
protein ZK829.10 protein.
Length = 669
Score = 27.9 bits (59), Expect = 7.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 380 SHHYSWPLSKWRW 418
S Y+WP+ KWRW
Sbjct: 481 SRAYTWPIWKWRW 493
>U80445-3|AAK68258.1| 85|Caenorhabditis elegans Antibacterial
factor related protein2 protein.
Length = 85
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 237 IASVVTENEDHQYEQNVKDVILERALEFVSQTGWSVESLSAGA--KSAGYPTITHGLFPN 410
+A++V + D + IL++A + + T S+++ G+ K +G PT N
Sbjct: 12 LATIVAADIDFSTCARMDVPILKKAAQGLCITSCSMQNCGTGSCKKRSGRPTCVCYRCAN 71
Query: 411 GGGDL 425
GGGD+
Sbjct: 72 GGGDI 76
>AB029810-1|BAA89490.1| 85|Caenorhabditis elegans ABF-2 protein.
Length = 85
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 237 IASVVTENEDHQYEQNVKDVILERALEFVSQTGWSVESLSAGA--KSAGYPTITHGLFPN 410
+A++V + D + IL++A + + T S+++ G+ K +G PT N
Sbjct: 12 LATIVAADIDFSTCARMDVPILKKAAQGLCITSCSMQNCGTGSCKKRSGRPTCVCYRCAN 71
Query: 411 GGGDL 425
GGGD+
Sbjct: 72 GGGDI 76
>AF078157-17|AAG24072.1| 1062|Caenorhabditis elegans Hypothetical
protein F25E5.1 protein.
Length = 1062
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +3
Query: 474 KLWPQEDLKGGSKVP-AKFIENAIV--TRLLMIKPY 572
++WP+ D + +++P KFI+N IV ++ MI Y
Sbjct: 933 EMWPKNDFERTTRIPRKKFIKNGIVEDSKFYMIGSY 968
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,570,241
Number of Sequences: 27780
Number of extensions: 291971
Number of successful extensions: 683
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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