Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7l17
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...   186   4e-48
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...   184   1e-47
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.0  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    27   2.0  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   2.0  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    27   2.7  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    26   6.2  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   8.2  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    25   8.2  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   8.2  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    25   8.2  

>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  186 bits (452), Expect = 4e-48
 Identities = 94/170 (55%), Positives = 109/170 (64%)
 Frame = +3

Query: 207 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 386
           SKVS   +   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP 
Sbjct: 2   SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61

Query: 387 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 566
           M +C+LGD    D AK   V  M                           SE LIKQIPR
Sbjct: 62  MSICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPR 121

Query: 567 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 716
           LLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ+KKVLCL VAVGHV
Sbjct: 122 LLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHV 171


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score =  184 bits (448), Expect = 1e-47
 Identities = 94/170 (55%), Positives = 110/170 (64%)
 Frame = +3

Query: 207 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 386
           SKVS  ++   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP 
Sbjct: 2   SKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61

Query: 387 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 566
           M +C+LGD    D AK   V  M                           SE LIKQIPR
Sbjct: 62  MAICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPR 121

Query: 567 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 716
           LLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ+KKVLCL VAVGHV
Sbjct: 122 LLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHV 171


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 5/111 (4%)
 Frame = +3

Query: 57   IYNLYESAIFSTVYSCWSRYCVILI*KNQVTFYHHDRARA*LSQIVSIFRSKVSRDT--- 227
            ++ +     F++VY C+  YC  L   N+      +     L + +S+ + K S  T   
Sbjct: 720  LWEIRHRGAFTSVYPCFIEYCSFLFECNKHEI--SELPDPWLHKNLSVIQEKSSFITRRS 777

Query: 228  --LYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 374
              +   + A+L + KDK+   +E   + +      P + K  +G   L  +
Sbjct: 778  GGIPLSITAILVAGKDKREQLIEQTVISLISIAKQPVEQKNIAGQFDLPQV 828


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 180 LSQIVSIFRSKVSRDTLYECVNAVLQSSKDKKRNFLETVE 299
           L   VSI RS V+   + E ++ +L+ +   ++ FLE +E
Sbjct: 635 LQNEVSILRSSVNHREVDEAIDNILRYTNSTEQQFLEAME 674


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 237  CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 353
            C N +++SS   K NF +TV +     +YD P+ D  + G
Sbjct: 939  CDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 22/70 (31%), Positives = 34/70 (48%)
 Frame = -1

Query: 429 PRHNVAGLQERKLAFSAAVCILALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEE 250
           P H +A LQE   A  AA+    L+ ++NA    G +S D  +AL  P    S      +
Sbjct: 317 PEHELAALQEHNEAHDAAMRQYELERQQNAM-LPGLASIDGLQAL--PHLDFSDSAVTNQ 373

Query: 249 RHSRTRRACH 220
            HS+++ + H
Sbjct: 374 SHSQSQNSLH 383


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 653 DFINLLRHGLLVGEKTREFTSFVQTGTQQTGNLLDQ 546
           D   L RH  L   + + F +  Q GT+   NL DQ
Sbjct: 424 DLFRLFRHSNLSTSREQIFQNLEQLGTRVIKNLTDQ 459


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 45  HTELIYNLYESAIFSTVYSCWSRYCVILI 131
           HT L YN+Y+   F    S W    + LI
Sbjct: 472 HTTLRYNIYQKQEFGPPVSLWVYQALFLI 500


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 581 FEQSW*I-PWSSLPPGVHDAED**SQGNH*VPNEEGAV 691
           F + W I P+ SLP G H +E          PN+EG V
Sbjct: 36  FPKEWSILPFLSLPDGAHSSEKDFVYFTLPFPNDEGTV 73


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 515 FGQFLDKLFVLIQFFQSLSIHTWHIQGFSLVTML 414
           +G+F+ +LF LIQ  +   +  W +   + VT++
Sbjct: 385 YGEFVMRLFFLIQKLRKKYLSRWGVLDAAFVTVI 418


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +3

Query: 240 VNAVLQSSKDKKRNFLETV 296
           +NA+L+ SK+KK N +E++
Sbjct: 370 INALLERSKEKKANVIESL 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,486
Number of Sequences: 5004
Number of extensions: 58869
Number of successful extensions: 159
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)