Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7l17
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   207   5e-54
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...   167   9e-42
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...   121   4e-28
Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical ...    29   3.3  

>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  207 bits (506), Expect = 5e-54
 Identities = 99/170 (58%), Positives = 120/170 (70%)
 Frame = +3

Query: 207 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 386
           SKVSR++L E +  VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP 
Sbjct: 2   SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPN 61

Query: 387 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 566
           M+VCV GDQ H DEA   ++P M                           SESLIKQIPR
Sbjct: 62  MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 121

Query: 567 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 716
           +LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV
Sbjct: 122 ILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHV 171


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score =  167 bits (405), Expect = 9e-42
 Identities = 78/134 (58%), Positives = 93/134 (69%)
 Frame = +3

Query: 315 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXX 494
           KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA   ++P M             
Sbjct: 8   KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKK 67

Query: 495 XXXXXXXXXXXXXXSESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 674
                         SESLIKQIPR+LGPGLNKAGKFP +++H ES+  K DE++ T+KFQ
Sbjct: 68  LIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQ 127

Query: 675 MKKVLCLSVAVGHV 716
           MKKVLCLSVAVGHV
Sbjct: 128 MKKVLCLSVAVGHV 141


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score =  121 bits (292), Expect = 4e-28
 Identities = 59/110 (53%), Positives = 70/110 (63%)
 Frame = +3

Query: 387 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 566
           M+VCV GDQ H DEA   ++P M                           SESLIKQIPR
Sbjct: 1   MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60

Query: 567 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHV 716
           +LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV
Sbjct: 61  ILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHV 110


>Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical
           protein R10E8.3 protein.
          Length = 522

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -2

Query: 701 YRKTQHLLHLELNGS--LDFINLLRHGLLVGEKTREFTSFVQTGTQQTGN 558
           +R    + HLEL GS  L+FI LL    L  +K R+ T F   G    GN
Sbjct: 348 FRNKISMAHLELKGSSELEFIQLL--DCLDAKKLRKLTIFATVGDVNNGN 395


>AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical
           protein E02H9.4 protein.
          Length = 118

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 264 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 374
           K +K N  E VEL   +KNY P+ + R    V+ KY+
Sbjct: 41  KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,020,698
Number of Sequences: 27780
Number of extensions: 335425
Number of successful extensions: 741
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)