Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7l15
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 29 0.60
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 27 2.4
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 4.2
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 26 5.6
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 25 7.4
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 25 9.7
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 25 9.7
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 25 9.7
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 29.1 bits (62), Expect = 0.60
Identities = 17/73 (23%), Positives = 32/73 (43%)
Frame = +1
Query: 244 QQNNRELTLNMLLKEMVFCVTLALTTYGALHNTSTKVSKHPQAYKFFGPESVVTDWYKGE 423
Q ++E L + + L + TY LH+ V + + KFF ++ ++ +
Sbjct: 656 QYKDKENPLKLTDSQRQRISLLKMATYSKLHHAVEGVKESFEQRKFFNAADIMKNFLLND 715
Query: 424 LSSAINKVNNVDV 462
LSS ++ DV
Sbjct: 716 LSSVYVELTRFDV 728
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 146 AVGNITRHSITNLRDTITNKMP 81
A+G +TRH+I N+ D + N +P
Sbjct: 459 ALGFLTRHAIVNMLDNLYNYIP 480
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 406 DWYKGELSSAINKVNNVDVSFV 471
D Y+ +SS ++K+N VDVS +
Sbjct: 34 DVYRSYISSELSKINGVDVSLI 55
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 4.2
Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = +1
Query: 133 MFPTANTEDITQVTSLSEKHSTDSDAQNSSENSQVSLQQN---NRELTLNMLLKEMVFCV 303
+F + NTE+I V+ S D+D+ N+ + + Q N + +++ + F
Sbjct: 283 LFGSENTEEIDTVSKTSGVLELDNDSTNNFQKEGLDEQDNLQKEESVHIDVPAEFEAFDE 342
Query: 304 TLALTTYGALHNTSTKVSKHPQAYKFFGPESVVTDWYKGELSSAINKVN 450
A+ L + ++ + FG E+ V + + E+ S I+ N
Sbjct: 343 RTAVVNVDNLKEMFSSNAQDTSKFSLFGNENGVGE--ESEMESEIDDRN 389
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 5.6
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -3
Query: 386 PKNLYACGCLDTFVDVLCK 330
P+NLYA C+D+ +D++ +
Sbjct: 330 PENLYAADCIDSALDLVAE 348
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 208 AQNSSENSQVSLQQNNRELTLNMLLKEMVFCVTLALTTYGALH 336
AQ S E + L Q N+EL N+L + + +L YG LH
Sbjct: 942 AQESLEACKACLLQGNKELCYNLLNESL----SLHEQIYGVLH 980
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 25.0 bits (52), Expect = 9.7
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Frame = +1
Query: 175 SLSEKHSTDSDAQNSSENSQVSLQQNNRELTLNMLLKEMVFCVTL-ALTTYGALHNTSTK 351
SLSE + + +N LQ+ N+ N+ + AL + A
Sbjct: 176 SLSESTAQSNKVENPQSTKDEPLQKTNQRQESNLATSPASTVSRVRALYDFAATEQGELS 235
Query: 352 VSKHPQAYKFFGPESVVTDWYKGELSSAI 438
K ESV DW+KG +A+
Sbjct: 236 FKKGDIILVL---ESVYKDWWKGSCKNAV 261
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = +2
Query: 161 LHRSRHYQRNIVRIAMHKTLPKIRKFHYNKI 253
++R ++QR +I +K++ +++ FH N I
Sbjct: 104 MNREANFQRTNEKIQRNKSIKRVKLFHGNLI 134
>SPAC8F11.07c |cdc24||DNA replication protein
Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 501
Score = 25.0 bits (52), Expect = 9.7
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = -3
Query: 284 LSNIFNVNSLLFCCNETCEFSEEFCASLSVLCFSDSDVTCVISSVFAVGNITRHSITN 111
LSN+ N S F N+ C+FS F L +T VI+ V N+TR S N
Sbjct: 357 LSNLENPLSSNFLRNDLCKFSNLFSGVSGHL--KIQPLTLVITGF--VANLTRQSDLN 410
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,863,330
Number of Sequences: 5004
Number of extensions: 58230
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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