Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7l12
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0426 - 17573681-17574010,17574163-17574282,17574382-175747... 41 7e-04
09_02_0096 - 4221935-4222231 37 0.014
01_05_0639 + 23873735-23873814,23873932-23874148,23874259-238744... 33 0.18
01_05_0637 + 23860857-23860936,23861057-23861273,23861388-238615... 33 0.18
09_02_0106 + 4347024-4347536,4349619-4349700,4350499-4350747,435... 33 0.24
01_05_0251 + 19952882-19955459,19956209-19956245,19956370-199565... 32 0.41
05_04_0372 + 20726103-20726139,20726266-20726302,20726953-207270... 31 0.95
01_06_0671 - 31076463-31076610,31077060-31077202,31077758-310779... 30 1.7
06_01_0244 - 1844161-1844241,1844356-1844394,1844510-1844617,184... 29 2.2
08_01_1036 + 10520727-10521117,10521301-10521479,10521603-105225... 28 5.1
08_01_0064 + 444888-444959,445073-445277,445736-445901,446029-44... 27 8.9
01_05_0273 - 20283965-20284085,20284197-20284348,20284828-202850... 27 8.9
>11_04_0426 -
17573681-17574010,17574163-17574282,17574382-17574754,
17575051-17575087,17575821-17575872
Length = 303
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 257 IYKQGSTRGIGIMPFLGGVVMTILNLQYGYILRDD-TMIQVNMFGLALNIVYVLIYFNYT 433
IYK ST+G +P++ + +L + Y + D+ +I +N G + +Y+ +Y Y
Sbjct: 36 IYKSKSTQGFQSVPYVVALFSAMLWIYYALLKSDECLLITINSAGCVIETIYIAVYLVYA 95
Query: 434 QQKVKVW 454
+K K++
Sbjct: 96 PKKAKMF 102
>09_02_0096 - 4221935-4222231
Length = 98
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Frame = +2
Query: 182 KEIVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMTILNLQYGY-ILRD 358
+ +VG + ++ G S W I K+ + P+L ++ +L + YG I+
Sbjct: 8 RNVVGIVGNAISFGLFLSPVLTFWRIIKEKDMKYFKADPYLATLLNCMLWVFYGLPIVHP 67
Query: 359 DTM--IQVNMFGLALNIVYVLIYFNYTQQK 442
+++ + +N GL + VY+ I+F ++ +K
Sbjct: 68 NSILVVTINGIGLVIEAVYLTIFFLFSNKK 97
>01_05_0639 +
23873735-23873814,23873932-23874148,23874259-23874420,
23876037-23876357
Length = 259
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/93 (22%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Frame = +2
Query: 182 KEIVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMTILNLQYGY-ILRD 358
+ +VG I ++ G + W I K+ P+L ++ +L + YG ++
Sbjct: 8 RNVVGIIGNVISFGLFLAPVPTFWRICKRKDVEEFKADPYLATLLNCMLWVFYGIPVVHP 67
Query: 359 DTMIQVNMFGLALNI--VYVLIYFNYTQQKVKV 451
++++ V + G+ L + Y+LI+F Y+ K ++
Sbjct: 68 NSILVVTINGIGLLVEGTYLLIFFLYSPNKKRL 100
>01_05_0637 +
23860857-23860936,23861057-23861273,23861388-23861549,
23862850-23863155
Length = 254
Score = 33.1 bits (72), Expect = 0.18
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +2
Query: 182 KEIVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMTILNLQYGY-ILRD 358
+ +VG I ++ G S W I K+ P+L ++ +L + YG I+
Sbjct: 8 RNVVGIIGNVISFGLFLSPVPTFWRICKRKDVEQFKADPYLATLLNCMLWVFYGIPIVHP 67
Query: 359 DT--MIQVNMFGLALNIVYVLIYFNYTQQKVKV 451
++ ++ +N GL + Y+ I+F Y+ K ++
Sbjct: 68 NSILVVTINGIGLIVEGTYLFIFFLYSPNKKRL 100
>09_02_0106 +
4347024-4347536,4349619-4349700,4350499-4350747,
4351594-4351646,4353064-4353159,4353289-4353423
Length = 375
Score = 32.7 bits (71), Expect = 0.24
Identities = 31/154 (20%), Positives = 68/154 (44%), Gaps = 10/154 (6%)
Frame = +2
Query: 182 KEIVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMTILNLQYGY-ILRD 358
+ +VG + ++ G S + I K + P+L ++ +L + YG I+
Sbjct: 8 RNMVGIVGNIISFGLFLSPVPTFYRIIKNKDVQDFKADPYLATLLNCMLWVFYGLPIVHP 67
Query: 359 DTM--IQVNMFGLALNIVYVLIYFNYTQQK-------VKVWAQIGLAGAVSAALIGYAQT 511
+++ + +N GL + VY+ I+F ++ +K V + +A V L+G
Sbjct: 68 NSILVVTINGIGLVIEAVYLTIFFLFSDKKNKKKMGVVLATEALFMAAVVLGVLLGAHTH 127
Query: 512 EDPKLVETRFGTIITAFMFYLIASPLFGLKEIIQ 613
+ L+ G + F + +SPL + ++++
Sbjct: 128 QRRSLI---VGILCVIFGTIMYSSPLTIMSQVVK 158
>01_05_0251 + 19952882-19955459,19956209-19956245,19956370-19956586,
19957063-19957221,19957397-19957516,19957609-19957719
Length = 1073
Score = 31.9 bits (69), Expect = 0.41
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 7/126 (5%)
Frame = +2
Query: 257 IYKQGSTRGIGIMPFLGGVVMTILNLQYG--YILRDDTMI-QVNMFGLALNIVY--VLIY 421
I + GST MP++ ++ ++ L YG ++ ++ VN G + Y I
Sbjct: 878 IVRNGSTEQFSAMPYIYSLLNCLICLWYGLPFVSYGVVLVATVNSIGALFQLAYTATFIA 937
Query: 422 FNYTQQKVKVWAQIGLAGAVSAALIGYAQTE--DPKLVETRFGTIITAFMFYLIASPLFG 595
F + +VKV + + + V ALI Y D + + G + A + ++ ASPL
Sbjct: 938 FADAKNRVKVSSLLVMVFGV-FALIVYVSLALFDHQTRQLFVGYLSVASLIFMFASPLSI 996
Query: 596 LKEIIQ 613
+ +I+
Sbjct: 997 INLVIR 1002
>05_04_0372 +
20726103-20726139,20726266-20726302,20726953-20727048,
20728343-20728625,20728862-20728981,20729072-20729284
Length = 261
Score = 30.7 bits (66), Expect = 0.95
Identities = 18/88 (20%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +2
Query: 251 WDIYKQGSTRGIGIMPFLGGVVMTILNLQYG--YILRDDTMIQ-VNMFGLALNIVYVLIY 421
W I ++ ST +P+ ++ +L+ YG ++ ++ ++ +N G + YV+++
Sbjct: 29 WRIIRRKSTEDFSGVPYNMTLINCLLSAWYGLPFVSPNNILVSTINGAGAVIETAYVVVF 88
Query: 422 FNYTQQKVKVWAQIGLAGAVSAALIGYA 505
+ +GLA AV++ A
Sbjct: 89 LVFASTHKTRLRTLGLAAAVASVFAAVA 116
>01_06_0671 -
31076463-31076610,31077060-31077202,31077758-31077963,
31078119-31078644,31078753-31078854,31079572-31079637,
31079710-31079822,31080260-31080345,31081007-31081146
Length = 509
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 439 LLGVIEVYQHVDDI*GQTEHVDLNHGVVTEYVTILQVEDGHNN 311
++GV+ VYQH +D H + G E I Q++DG +N
Sbjct: 110 MIGVVHVYQHTND----GHHAIASVGTTAEIHHIKQLDDGSSN 148
>06_01_0244 -
1844161-1844241,1844356-1844394,1844510-1844617,
1844638-1844685,1845058-1845111,1845214-1845268,
1845442-1845522,1846238-1846615,1847196-1847401
Length = 349
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +1
Query: 283 DRHHAVPRRCCYDH-PQLAIWLHTP*RHHDSSQHVR 387
D AVP CC P IW+H P S H+R
Sbjct: 121 DNIDAVPSGCCLSSSPGSVIWVHKPPEGRRGSYHIR 156
>08_01_1036 +
10520727-10521117,10521301-10521479,10521603-10522593,
10522613-10522656
Length = 534
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 154 RLSGYSSTVQRDSGLDSGLRNHWADVLRQFHMLGHIQAGQH 276
RLS ST S L G N WAD+ +QFH + +G H
Sbjct: 434 RLSLSESTFTWFSSLPYGSINSWADLEKQFH--SYFYSGVH 472
>08_01_0064 +
444888-444959,445073-445277,445736-445901,446029-446251,
446982-447058,447370-447557,447845-447942,448202-448335,
448421-448555,448832-448960,449263-449632,449897-450018,
450155-450274,450396-450626,450706-450894,450978-451089,
451193-451438
Length = 938
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 242 FICWDIYKQGSTRGIGIMPFLGGVVMTILNL 334
FI WD +K ++ ++ LGGV L+L
Sbjct: 377 FIHWDFHKFAKSKSANVLGVLGGVASEALDL 407
>01_05_0273 -
20283965-20284085,20284197-20284348,20284828-20285001,
20285082-20285331,20285782-20285898,20286412-20286474,
20286568-20286740
Length = 349
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 523 LRIFGLGVSYKSS*HSTGQTDLSPNLDLLLGVI 425
+ I+GLG+SY S+ S+ ++L P L L V+
Sbjct: 84 VNIYGLGLSYSSATSSSAISNLLPVLAFFLAVL 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,480,129
Number of Sequences: 37544
Number of extensions: 369122
Number of successful extensions: 892
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -