Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7l11
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   368   e-104
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   359   e-101
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...   233   1e-63
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   151   4e-39
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    24   1.2  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    24   1.2  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    24   1.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.7  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   6.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.1  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  368 bits (905), Expect = e-104
 Identities = 173/188 (92%), Positives = 179/188 (95%)
 Frame = +1

Query: 1   IGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNV 180
           IGGIGTVPVGRVETGVLKPG +V FAPA +TTEVKSVEMHHEALQEAVPGDNVGFNVKNV
Sbjct: 256 IGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNV 315

Query: 181 SVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEI 360
           SVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFA+I
Sbjct: 316 SVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFADI 375

Query: 361 KEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAV 540
           KEK DRR GK+TE NPKSIKSGDAAIV LVPSKP+C E+FQEFPPLGRFAVRDMRQTVAV
Sbjct: 376 KEKCDRRNGKTTEENPKSIKSGDAAIVMLVPSKPMCAEAFQEFPPLGRFAVRDMRQTVAV 435

Query: 541 GVIKAVNF 564
           GVIKAV F
Sbjct: 436 GVIKAVTF 443


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  359 bits (882), Expect = e-101
 Identities = 167/188 (88%), Positives = 178/188 (94%)
 Frame = +1

Query: 1   IGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNV 180
           IGGIGTVPVGRVETG+LKPG +V FAPA +TTEVKSVEMHHEAL EA+PGDNVGFNVKN+
Sbjct: 256 IGGIGTVPVGRVETGILKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDNVGFNVKNI 315

Query: 181 SVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEI 360
           SVKELRRGYVAGDSKN PP+GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEI
Sbjct: 316 SVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEI 375

Query: 361 KEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAV 540
           KEK DRRTGK+TE NPKSIKSGDAAIV L P+KP+CVE+FQEFPPLGRFAVRDMRQTVAV
Sbjct: 376 KEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAV 435

Query: 541 GVIKAVNF 564
           GVIK+V F
Sbjct: 436 GVIKSVTF 443



 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 155 LSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFN 48
           L PG     A   ++T++ SV M   A T  +PG N
Sbjct: 272 LKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDN 307


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score =  233 bits (569), Expect = 1e-63
 Identities = 108/119 (90%), Positives = 113/119 (94%)
 Frame = +1

Query: 103 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 282
           KSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN PP+GAADFTAQVIVLNH
Sbjct: 1   KSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNH 60

Query: 283 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSK 459
           PGQISNGYTPVLDCHTAHIACKFAEIKEK DRRTGK+TE NPKSIKSGDAAIV L P+K
Sbjct: 61  PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTK 119


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  151 bits (367), Expect = 4e-39
 Identities = 71/76 (93%), Positives = 73/76 (96%)
 Frame = +1

Query: 1   IGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNV 180
           IGGIGTVPVGRVETGVLKPG +V FAPA +TTEVKSVEMHHEALQEAVPGDNVGFNVKNV
Sbjct: 199 IGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNV 258

Query: 181 SVKELRRGYVAGDSKN 228
           SVKELRRGYVAGDSKN
Sbjct: 259 SVKELRRGYVAGDSKN 274


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 671 KYRSCMKNCAVNSSSYFLPLVAFS 600
           K+  C+KN A   SSYF+  + F+
Sbjct: 94  KFYDCLKNSADTISSYFVGKMYFN 117


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 671 KYRSCMKNCAVNSSSYFLPLVAFS 600
           K+  C+KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 671 KYRSCMKNCAVNSSSYFLPLVAFS 600
           K+  C+KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 181 SVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 288
           S ++LR  ++A +   + PKG      Q++VLN  G
Sbjct: 283 STRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAG 318


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 300 RLHTSLGLPHCPHC 341
           RLHT     HC HC
Sbjct: 30  RLHTGEKPYHCSHC 43


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 18/63 (28%), Positives = 24/63 (38%)
 Frame = -1

Query: 384 STTVNFFFDFCKFAGNVGSVAIQDWCVTV*DLTRMVKHNDLSCKICSTLRWVVFGVTSNI 205
           ST+ N  F   K  G  G   +   CVT     R   HN +  + C      V   + N+
Sbjct: 77  STSENKTFPTIKIVGYKGRALVVVSCVTKDQPYRPHPHNLVGKEACKQGVCTVEVSSENM 136

Query: 204 TTT 196
           T T
Sbjct: 137 TVT 139


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 18/63 (28%), Positives = 24/63 (38%)
 Frame = -1

Query: 384 STTVNFFFDFCKFAGNVGSVAIQDWCVTV*DLTRMVKHNDLSCKICSTLRWVVFGVTSNI 205
           ST+ N  F   K  G  G   +   CVT     R   HN +  + C      V   + N+
Sbjct: 77  STSENKTFPTIKIVGYKGRALVVVSCVTKDQPYRPHPHNLVGKEACKQGVCTVEVSSENM 136

Query: 204 TTT 196
           T T
Sbjct: 137 TVT 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,419
Number of Sequences: 438
Number of extensions: 4027
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)