Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7l09
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 28 1.0
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 27 2.4
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 2.4
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 5.5
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.3
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 7.3
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 25 7.3
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.6
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 25 9.6
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = -3
Query: 174 QRINNIV*NRSK----NASFNFTTYYTINNLNKYLHICDD 67
+R NNI R+K N FNF+TY ++Y + C+D
Sbjct: 45 KRFNNISKERTKGKGGNPVFNFSTYLFDRQFSQYPYSCND 84
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = -3
Query: 276 LRDLNIKF*KYSQKNETFNNIVKIILQDKTVRVLQRINNIV*NRSKNASFNFTTYYTINN 97
LRD++ K + N T NNI KI + + V +++ + + + K+ + + T YY N
Sbjct: 191 LRDISQKHAAHVVINVTNNNI-KIEAKKRDVAIVEELISGIFKHLKSKTIDVTEYYA-NI 248
Query: 96 LNK 88
+NK
Sbjct: 249 INK 251
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 410 IFLVLKCVNLLFINGQDINWSRLSTHLKPS 321
+F +L C+ +GQ ++SRL +L PS
Sbjct: 1266 LFSILTCIYNRITSGQGFSYSRLLVYLPPS 1295
>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 386
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 481 RRWAYWLGLRLPTRSSISPLATYRLLPVTCETDKGL 588
RR + L L LP+ + ++P RLL E+ KG+
Sbjct: 129 RRLLHHLSLMLPSFNELTPTQQRRLLTRALESKKGI 164
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 656 TSGSRSTPLFSSSSANDSAPETVSPLSVSQV 564
T+ + STPL S SSAN + + S +S V
Sbjct: 316 TTSASSTPLSSVSSANSTTATSTSSTPLSSV 346
>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 314
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 532 SPLATYRLLPVTCETDKGL 588
SPL YR +TCETD L
Sbjct: 160 SPLTVYRNHLLTCETDSAL 178
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 331 KCVDNLDQLMS*PLMKSKLTHFNTRNIYHSC 423
K V+N QL+ KSK H N+R++Y C
Sbjct: 869 KTVENGSQLLD---SKSKAIHSNSRSMYDHC 896
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 7.3
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Frame = -1
Query: 467 PRTVPHAVAFTV-TVSHEW*IFLVLKCVNLLFINGQDINWSRLSTHLKPSSTLNFNLHFL 291
P T P T T+ H+W + + + ++ D N R + SST+N L
Sbjct: 349 PTTAPRIAKHTYETIYHQWHSLRIREQIASFMLDIADHNVKRYGKSEESSSTMNVGEGLL 408
Query: 290 LSCKYY 273
K Y
Sbjct: 409 KRTKKY 414
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -1
Query: 656 TSGSRSTPLFSSSSANDSAPETVSPLSVS 570
TS S +TP SS++++ S+ + +P+S S
Sbjct: 142 TSSSTATPSSSSTTSSSSSSSSSTPISSS 170
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -1
Query: 335 HLKPSSTLNFNLHFLLSCKY 276
H PS L LHFL SC Y
Sbjct: 193 HSGPSMALRIFLHFLRSCFY 212
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,237
Number of Sequences: 5004
Number of extensions: 45747
Number of successful extensions: 244
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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