Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7l09
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446...    30   1.9  

>03_01_0607 +
           4464669-4465367,4466212-4467369,4468005-4469114,
           4469273-4469314,4469496-4469572,4469671-4469755,
           4469818-4469901,4469988-4470089,4470181-4470279,
           4470794-4470919
          Length = 1193

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 511 SEGPASKPSAANTNTRAPCHMPSPSP 434
           S GPAS PS + T++ AP  + +P P
Sbjct: 28  SSGPASAPSTSTTSSSAPLPVAAPPP 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,859,074
Number of Sequences: 37544
Number of extensions: 273807
Number of successful extensions: 797
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)