Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7l09
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.5  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   7.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   7.8  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    21   7.8  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 181 SHCFILKNYFYYV 219
           SHC + +N+FY +
Sbjct: 192 SHCVVCQNFFYQI 204


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 391 VSTCSSSMVKTLIGQDCQH 335
           +S CSS   K L+   C+H
Sbjct: 54  LSACSSYFQKLLLSNPCKH 72


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -3

Query: 198 QDKTVRVLQRINNIV*NRSKNASFNFTTYYTINNLNKYLHICDDKVINLFK 46
           QD+T R   +   I+ + S N  ++    Y  N  N Y +  ++    L+K
Sbjct: 68  QDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYK 118


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -3

Query: 198 QDKTVRVLQRINNIV*NRSKNASFNFTTYYTINNLNKYLHICDDKVINLFK 46
           QD+T R   +   I+ + S N  ++    Y  N  N Y +  ++    L+K
Sbjct: 68  QDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYK 118


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 198 QDKTVRVLQRINNIV*NRSKNASFNFTTYYTINNLNKY 85
           +D+  R   +   IV + S N  +N++ Y   NN N Y
Sbjct: 68  RDRRERERSKEPKIVSSLSNN--YNYSNYNNYNNNNNY 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,739
Number of Sequences: 438
Number of extensions: 2906
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)