Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7l04
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 122 4e-29
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 30 0.22
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 26 3.6
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 26 4.8
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 6.3
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po... 25 6.3
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 25 6.3
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1... 25 8.3
SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.3
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 122 bits (294), Expect = 4e-29
Identities = 65/163 (39%), Positives = 91/163 (55%), Gaps = 5/163 (3%)
Frame = +3
Query: 105 RFSSYFVIFCSVIIFAQSDVPRP---RGVSLSKASLYLPTK--DFTCFDGTATIPFSYVN 269
+FS ++ + ++I + V RGV+ K+ LY P ++ C I F+ VN
Sbjct: 2 KFSQWYTLTAPLLISSLYTVNAANDLRGVASDKSDLYKPDAKGNWKCLGSDKLISFNQVN 61
Query: 270 DDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDGVCDCCDGTDEYANPTAC 449
DDYCDC DGSDEPGTSAC NG F C N G+ +PS+RV+D VCDCCDG+DE + C
Sbjct: 62 DDYCDCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVCDCCDGSDE--SLIKC 119
Query: 450 TNICEELGKEARAEAQRVAELHKAGSQLRIDLIEKGNKKRNEM 578
N C + +E A + L K G ++R + KK +E+
Sbjct: 120 PNTCAQKAREYLATLEEHNRLVKNGLKIREQWALESAKKTDEV 162
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 30.3 bits (65), Expect = 0.22
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Frame = +3
Query: 258 SYVNDDYCDCFDGSD-EPGTSACINGVFHCTNAGHRPQNLPSSRVNDGVCDCCDGTDEYA 434
SY C GS +PG+ + F C G R +P S CD C GT
Sbjct: 233 SYSVSSTCSSCHGSGLQPGSHK--STCFACKGTGQRLHFIPPSFHMQTTCDSCGGTGTTI 290
Query: 435 NPTACTNIC 461
P + C
Sbjct: 291 PPNSACRSC 299
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -1
Query: 112 ENRSIHVLQTMVIV*LTINEIP 47
ENRS+ +LQT ++V +T++ IP
Sbjct: 1355 ENRSLTLLQTTLLVLVTVHLIP 1376
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 336 FHCTNAGHRPQNLPSSRVNDGVCDCCDGTDEYANPTACT 452
F C GH Q+ P ++ N +C C + N AC+
Sbjct: 80 FACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLN--ACS 116
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.4 bits (53), Expect = 6.3
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +3
Query: 270 DDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDGVCDCCDGTDEYAN 437
DD F S A + +NAGH QNL + V+ V +G +E +N
Sbjct: 250 DDIASDFFSSPSADLEADDFTTLNNSNAGHLLQNLSNDNVSVSVKALENGNEEVSN 305
>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +3
Query: 144 IFAQSDVPRPRGVSLSKASLYLPTKDFTCFDGTATIPFSYVNDDYCDC 287
+F D RP+ + L +AS DF+ D T F Y D +C
Sbjct: 281 LFISGDCYRPQSIKLIRASGETEVFDFSFDDATG---FFYEQDAVAEC 325
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 179 CIFV*SISLFTDKRFYLF*WNCY 247
C F I+ F D+ FY WNC+
Sbjct: 341 CNFSAEITRFADRNFYDDWWNCW 363
>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 150 AQSDVPRPRGVSLSKASLYLPTKDFTCFDGTATIPFSYVNDDY 278
A++ +P P VS++ + +PT+D T DG P S V DY
Sbjct: 50 AETILPLPDDVSVT--DILIPTRDGTEIDGRVFTPVS-VPADY 89
>SPAP27G11.11c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 73
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -3
Query: 554 FFYEVYSQ--LAACFMQLCYSLSFCSGFFSELFTNVSTGRRISVFIC 420
F + YS+ L +C+ Y L CSG F ++ + +S+ IC
Sbjct: 12 FKIDSYSKTFLLSCYCVSIYRLEECSGRFKPSSYSLHLLKSLSIIIC 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,226,274
Number of Sequences: 5004
Number of extensions: 44804
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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