Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7l04
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1206 - 9702128-9702184,9702272-9702323,9702410-9702471,970... 130 6e-31
01_06_0731 - 31555078-31555082,31555750-31555857,31555948-315561... 73 1e-13
03_02_0488 - 8824980-8825267,8825364-8827775 29 2.8
02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112... 29 2.8
10_02_0091 - 5190536-5191794,5191878-5192030,5192501-5193099,519... 29 3.7
12_01_0164 - 1234885-1234965,1235299-1235417,1235504-1235742,123... 28 4.9
11_01_0144 + 1187532-1187813,1188913-1189454,1189621-1189707,119... 28 4.9
03_01_0207 - 1633177-1633372,1633623-1633688,1633778-1633859,163... 28 4.9
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 28 6.5
>01_01_1206 -
9702128-9702184,9702272-9702323,9702410-9702471,
9702578-9702665,9703027-9703095,9703224-9703281,
9703895-9703996,9704075-9704179,9704273-9704624,
9706005-9706100,9706427-9706501,9707192-9707370,
9707501-9707740,9707922-9708017,9708193-9708306,
9708428-9708527
Length = 614
Score = 130 bits (315), Expect = 6e-31
Identities = 56/109 (51%), Positives = 72/109 (66%)
Frame = +3
Query: 228 CFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDGVCD 407
C DG+ +NDD+CDC DG+DEPGTSAC G F+C NAGH P + SSRVNDG+CD
Sbjct: 45 CRDGSGRFARDKLNDDFCDCPDGTDEPGTSACPEGKFYCQNAGHSPITIFSSRVNDGICD 104
Query: 408 CCDGTDEYANPTACTNICEELGKEARAEAQRVAELHKAGSQLRIDLIEK 554
CCDG+DEY + C N C E GK AR + ++ +K+G +R I+K
Sbjct: 105 CCDGSDEYDSNVTCKNTCWEAGKAARDKLKKKVATYKSGVVIRNQEIQK 153
>01_06_0731 -
31555078-31555082,31555750-31555857,31555948-31556166,
31556320-31556415,31557264-31557387
Length = 183
Score = 73.3 bits (172), Expect = 1e-13
Identities = 31/59 (52%), Positives = 38/59 (64%)
Frame = +3
Query: 294 GSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDGVCDCCDGTDEYANPTACTNICEEL 470
G GTSAC +G F+C NAG P+ L SS VND +CDCCDG+DEY + C N C +
Sbjct: 37 GVSPQGTSACPDGRFYCRNAGDTPRLLFSSVVNDKICDCCDGSDEYESGIRCPNTCRNI 95
Score = 30.7 bits (66), Expect = 0.92
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +3
Query: 258 SYVNDDYCDCFDGSDE 305
S VND CDC DGSDE
Sbjct: 66 SVVNDKICDCCDGSDE 81
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 29.1 bits (62), Expect = 2.8
Identities = 39/157 (24%), Positives = 59/157 (37%)
Frame = +3
Query: 111 SSYFVIFCSVIIFAQSDVPRPRGVSLSKASLYLPTKDFTCFDGTATIPFSYVNDDYCDCF 290
S F F S + + + R S S+ PT D +C G DD C
Sbjct: 673 SREFAAFISAVSQQEPETSRHSSSQHSSRSMSTPT-DCSCPLGNF---HPNTRDDSC--- 725
Query: 291 DGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDGVCDCCDGTDEYANPTACTNICEEL 470
+ + NG FH T+ +P L + G CD C G DE ++ +
Sbjct: 726 --ASSSVLAVLPNG-FHGTSTSGQPLPLIERWKSGGACD-CGGWDE----GCMLSVLSDD 777
Query: 471 GKEARAEAQRVAELHKAGSQLRIDLIEKGNKKRNEMA 581
+E + + A GSQ R DL +G + ++ A
Sbjct: 778 ARENKGDKSTQANQTTDGSQ-RFDLFVQGRSREDKHA 813
>02_05_0075 -
25610386-25610508,25610529-25610583,25610801-25611240,
25612951-25613619,25614551-25615870
Length = 868
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 112 PPIS*YFVPSSYLPSPMCLDPAVYLCLKHLSIYRQKIL 225
PP S + P +Y PSP P + L++ S+Y Q +L
Sbjct: 102 PPSSRHIFPFAYDPSPGAAAPRLLPLLQYSSLYPQPLL 139
>10_02_0091 -
5190536-5191794,5191878-5192030,5192501-5193099,
5193771-5193837,5194177-5195170
Length = 1023
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +3
Query: 312 TSACINGVFHCTN-AGHRPQNLPSSRVNDGVCDCCDGTDE-YANPTACTNICE 464
+S+C+N + G+R LP R N + D C+ DE P C +C+
Sbjct: 518 SSSCLNVLSSMDGYVGYRCSCLPGYRGNPYILDGCEDIDECRETPGICKGVCK 570
>12_01_0164 -
1234885-1234965,1235299-1235417,1235504-1235742,
1235843-1235899,1236057-1236143,1236311-1236471
Length = 247
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = -3
Query: 569 SLLISFFYEVYSQLAACFMQLCYSLSFCSGFFSELFTNVSTGRRISV 429
S++ISF+ V+ QLA F C L++ +GF S FT++ ++S+
Sbjct: 3 SMVISFWIPVFGQLAFVFFGGC-PLTW-TGFSSSAFTDLGAIMKLSL 47
>11_01_0144 +
1187532-1187813,1188913-1189454,1189621-1189707,
1190151-1190260,1190346-1190464,1190548-1190634,
1191554-1191853
Length = 508
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = -3
Query: 569 SLLISFFYEVYSQLAACFMQLCYSLSFCSGFFSELFTNVSTGRRISV 429
S++ISF+ V+ QLA F C L++ +GF S FT++ ++S+
Sbjct: 224 SMVISFWIPVFGQLAFVFFGGC-PLTW-TGFSSSAFTDLGAIMKLSL 268
>03_01_0207 -
1633177-1633372,1633623-1633688,1633778-1633859,
1633942-1634037,1634413-1634518,1634602-1634661,
1635114-1635234,1635929-1636040,1636118-1636217,
1636328-1636382,1636489-1636595,1636798-1636850,
1636989-1637114,1637909-1638065,1638226-1638421,
1638917-1639073,1639139-1639379,1639475-1639605,
1639704-1639826,1639929-1639984,1640610-1640767,
1640847-1640984,1641070-1641123
Length = 896
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -1
Query: 181 TPRGLGTSDWANMMTEQNITK*EENRSIHVLQTMVI 74
TP+G DW Q +TK N S VLQT++I
Sbjct: 842 TPKGDKGGDWVVDEVHQRVTKPGTNVSYAVLQTVMI 877
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 462 EELGKEARAEAQRVAELHKAGSQLRIDLIEKGNKKRNEMAEQ 587
EEL K RA+ QR +LH+ +L +++ +K K E+ E+
Sbjct: 584 EELLKRERADLQRNLQLHR--HELEMEMEKKQASKERELEEK 623
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,056,024
Number of Sequences: 37544
Number of extensions: 281966
Number of successful extensions: 705
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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