Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7l04
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.74 
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     25   0.74 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 450 TNICEELGKEARAEAQRVAELHKAGSQLRIDLIEKGNKKR 569
           TNI EE+ KEA+   + +  L     Q + D+ E    KR
Sbjct: 433 TNISEEVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKR 472


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 450 TNICEELGKEARAEAQRVAELHKAGSQLRIDLIEKGNKKR 569
           TNI EE+ KEA+   + +  L     Q + D+ E    KR
Sbjct: 139 TNISEEVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKR 178


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 384 WNSANSEAGVRHLYNGKHRLYKP 316
           WN  +   GVR L    HRL+KP
Sbjct: 87  WN-VSDYGGVRDLRIPPHRLWKP 108


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 13/47 (27%), Positives = 18/47 (38%)
 Frame = -3

Query: 461 TNVSTGRRISVFICSITAITDSVINPGTRQILRPVSGICTMENTVYT 321
           T +   RR S  IC +  + +SV        +   S   TME    T
Sbjct: 373 TIIDVSRRRSSLICDVYGVNESVSYERGSMTVSVTSKPSTMERQTQT 419


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 557 SFFYEVYSQLAACFMQL 507
           +FFY++Y+ L + ++ L
Sbjct: 199 NFFYQIYATLGSFYIPL 215


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,126
Number of Sequences: 438
Number of extensions: 3011
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)