Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7k13
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   1.5  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    26   3.6  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    26   4.7  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    26   4.7  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.2  
SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha...    25   8.3  
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    25   8.3  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -2

Query: 412 SGVIVYFFRERAVYSSRISKQFYFQIARSKGPYHSGGVP 296
           + +I+  +RE  +  ++I +  Y Q+   K  YH+   P
Sbjct: 639 NAIIISMYREHLISRTQIQELLYHQVPSEKAGYHTLRAP 677


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 449 TVRTQEYLRLHTLGKAMGIPSEVLDPHEAQK 541
           ++RT E +R + L  A G  + VL PH  ++
Sbjct: 216 SIRTDEVIRFYELEYAPGSTAAVLSPHNYRR 246


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 323 LRPCDLE-VKLLRDSRTVYSALAKEVDDYAGW 415
           L P  +E ++LLRD +T +     +VD   GW
Sbjct: 586 LEPQTIESIRLLRDQKTPFVVALNKVDRLYGW 617


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 377 CIQFSNLEAILLPNRTVEGTIPFRRCAMSFR 285
           C+Q    EA L   RTV  T+ F R  M ++
Sbjct: 27  CLQVLFHEAFLSEQRTVNNTVTFDRYTMQYQ 57


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 103 CSYPNAAVSYDFEHFFRNTKSNTRSLPAR 17
           CSYP     Y+F  FF   K+    +  R
Sbjct: 15  CSYPTFRTLYEFNKFFLRYKTEISKIQRR 43


>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
           Exg3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 464

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -2

Query: 562 WVQQWKDFLRFMRVQHFTGDSHCFTQSMKT 473
           W Q W+D++ F++     G    +TQ   T
Sbjct: 402 WNQAWEDYIEFLQHGAMIGFPRAWTQKRMT 431


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 450 RFVHKSIYVFILWVKQWESPVKCWTLM 530
           RFV+      + +V +W  P   W+L+
Sbjct: 433 RFVYNKFQPGVFYVGKWSKPAALWSLV 459


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,873
Number of Sequences: 5004
Number of extensions: 48191
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)