Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7k13
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-18|AAK27867.2|  830|Caenorhabditis elegans Hypothetical...    37   0.009
AC087079-17|AAT81177.1|  837|Caenorhabditis elegans Hypothetical...    31   0.46 
AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical...    28   4.3  
U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein...    28   5.7  
U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein...    28   5.7  
AF016684-2|ABC71832.1|  224|Caenorhabditis elegans Hypothetical ...    28   5.7  
U42839-9|AAC69013.3|  355|Caenorhabditis elegans Ligand-gated io...    27   10.0 
AF016676-9|AAG24107.1|  394|Caenorhabditis elegans Hypothetical ...    27   10.0 

>AC087079-18|AAK27867.2|  830|Caenorhabditis elegans Hypothetical
           protein Y37E3.17a protein.
          Length = 830

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
 Frame = +2

Query: 227 YQLSKRGVNAVLL-ERAK---LTSGTTWHTAGMVWSLRPCDLEVKLLRDSRTVYSALAKE 394
           Y L+KR +  VLL ERA      SGT++H+ G+V +  P      +L  S  +YS L  E
Sbjct: 44  YHLTKRNIKDVLLLERASGVASPSGTSFHSPGLVSASHPAHRYKPILAHSIELYSKLEAE 103

Query: 395 VDDYAGWINNGGMFISRSTVRTQE---YLRLHTLGKAMGIPSEVLDPHEAQKIFPLLDPS 565
                 +   G + ++ +  R  E   Y+      +     + +L P + +++ P +D S
Sbjct: 104 TGVNIDFQPTGTIRLATNETRLAEFRKYVNRDYYKEGDVCKTTLLTPDQVRELAPDVDHS 163

Query: 566 AFKMALY 586
               AL+
Sbjct: 164 KILGALH 170


>AC087079-17|AAT81177.1|  837|Caenorhabditis elegans Hypothetical
           protein Y37E3.17b protein.
          Length = 837

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 14/134 (10%)
 Frame = +2

Query: 227 YQLSKRGVNAVLL-ERAK----------LTSGTTWHTAGMVWSLRPCDLEVKLLRDSRTV 373
           Y L+KR +  VLL ERA             SGT++H+ G+V +  P      +L  S  +
Sbjct: 44  YHLTKRNIKDVLLLERASDGDFGVHGVASPSGTSFHSPGLVSASHPAHRYKPILAHSIEL 103

Query: 374 YSALAKEVDDYAGWINNGGMFISRSTVRTQE---YLRLHTLGKAMGIPSEVLDPHEAQKI 544
           YS L  E      +   G + ++ +  R  E   Y+      +     + +L P + +++
Sbjct: 104 YSKLEAETGVNIDFQPTGTIRLATNETRLAEFRKYVNRDYYKEGDVCKTTLLTPDQVREL 163

Query: 545 FPLLDPSAFKMALY 586
            P +D S    AL+
Sbjct: 164 APDVDHSKILGALH 177


>AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical
           protein F53G12.3 protein.
          Length = 1503

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +2

Query: 338 LEVKLLRDSRTVYSALAKEVDD--YAGWINN 424
           LE+K+     T++SAL +E +   Y GW NN
Sbjct: 17  LEIKVQFSKETLFSALQQEAETQRYDGWYNN 47


>U41746-5|AAT81186.1|  492|Caenorhabditis elegans Innexin protein
           10, isoform b protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 278 LTSGTTWHTAGMVWSLRPCDLEVKLL 355
           L +GTTW  +GM   +  CD +V+++
Sbjct: 237 LLNGTTWEQSGMFPRVSLCDFDVRVM 262


>U41746-4|AAA83332.1|  559|Caenorhabditis elegans Innexin protein
           10, isoform a protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 278 LTSGTTWHTAGMVWSLRPCDLEVKLL 355
           L +GTTW  +GM   +  CD +V+++
Sbjct: 237 LLNGTTWEQSGMFPRVSLCDFDVRVM 262


>AF016684-2|ABC71832.1|  224|Caenorhabditis elegans Hypothetical
           protein F45C12.10b protein.
          Length = 224

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
 Frame = -1

Query: 566 LMGPTVERFSALHE-----GPTLHWGFPLLYPKYEDVNTLVYEPCFLI*TCLH 423
           LM PT E  S   E     G    +GF   +P  + V  LV E C ++  C H
Sbjct: 59  LMRPTGESISQSSEVCLLGGERQKYGFGFCFPWEKLVKELVVEDCLVVEVCAH 111


>U42839-9|AAC69013.3|  355|Caenorhabditis elegans Ligand-gated ion
           channel protein 3 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +3

Query: 456 VHKSIYVFILWVKQWESPVKCWTLMKRRKSFHCWTHQRSKWL 581
           +++++ V +  V+QW      W + + R   H W  + S W+
Sbjct: 108 LNQNMQVLVYIVQQWTDASLSWKVEEFRGIKHTWLPEHSIWI 149


>AF016676-9|AAG24107.1|  394|Caenorhabditis elegans Hypothetical
           protein F41B5.10 protein.
          Length = 394

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +2

Query: 224 LYQLSKRGVN-AVLLERAKLTSGTTWHTAGMVWSLRPCDLEVKLLRDSRTVYSALAK 391
           L  LS+ G +  +L+   K+ + T W T    +++ P D+++K+++    VY    K
Sbjct: 169 LRHLSRMGKDETILIWEQKILNTTDWLTNFNEFNVLPLDVQLKIVKTIWQVYGRFEK 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,493,994
Number of Sequences: 27780
Number of extensions: 271032
Number of successful extensions: 597
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)