Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7k13
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   3.9  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   9.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.0  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 458 TQEYLRLHTLGKAMGIPSEVLD 523
           +Q YL +H+    + IPS  +D
Sbjct: 377 SQNYLTVHSFPSTLNIPSVKID 398


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 324 RDHTIPAVCHV 292
           R HT+P  CH+
Sbjct: 37  RTHTLPCKCHL 47


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 341 EVKLLRDSRTVYSALAKEVDDYAGWINNGGMFISRSTVRTQEYLRL 478
           +VK+LR+ R        + D  + + +NG      +    Q+YLRL
Sbjct: 132 DVKILRNDRIDSYKSNLKCDKCSTYQSNGEEVCLENCTGYQQYLRL 177


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,327
Number of Sequences: 438
Number of extensions: 3603
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)