Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7k12
         (178 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   1.3  
SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma...    24   2.3  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    23   4.1  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    23   7.1  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    23   7.1  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    23   7.1  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    22   9.4  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        22   9.4  

>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 94   QPSQWKQQLCWYLGLGCR 147
            QP QW Q+LC    L CR
Sbjct: 1785 QPFQWFQELCVKAFLACR 1802


>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 120

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 96 LMRWMLLVKPTWLWLMM 46
          L RW  L  PTWL++++
Sbjct: 45 LSRWWALAIPTWLFVLV 61


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 5   TGSYYMDTLHNDVAIINHNHVGFTNNIQRINLAS 106
           T S Y+ T +ND+    H  +GF + ++R  L++
Sbjct: 127 TPSTYVAT-YNDLPCTYHRAIGFVSRVRRALLSN 159


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 67  WLHQQHPAHQPSQW 108
           + H   PAHQP  W
Sbjct: 673 YAHSDVPAHQPDVW 686


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 23  DTLHNDVAIINHNHVGFTN 79
           DTLH  +++   N VGF N
Sbjct: 767 DTLHEKLSLAVENTVGFGN 785


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 91  HQPSQWKQQLC 123
           H P+ WKQ LC
Sbjct: 49  HDPALWKQGLC 59


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 87  WMLLVKPTWLW 55
           W+L+VKP  LW
Sbjct: 635 WLLIVKPFVLW 645


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 20  MDTLHNDVAIINHNHVGFTNNIQRI--NLASGSNN 118
           MD LH  ++  + + +G  NN++ I  +  +G NN
Sbjct: 299 MDVLHAGLSYASGDIMGAINNVKNIFTSATNGFNN 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 504,434
Number of Sequences: 5004
Number of extensions: 5849
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 39
effective length of database: 2,167,322
effective search space used: 41179118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)