Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7k12
         (178 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0490 - 3782195-3782305,3782929-3783021,3783199-3783294,378...    27   2.8  
12_02_0814 - 23410278-23411854,23411933-23412166,23412688-234127...    25   6.5  
02_04_0381 - 22497519-22497769,22498157-22498247                       25   6.5  
03_05_1164 - 30863063-30863095,30863308-30864777                       25   8.6  
03_02_0564 - 9477118-9477200,9477617-9477687,9477799-9477944,947...    25   8.6  

>11_01_0490 -
           3782195-3782305,3782929-3783021,3783199-3783294,
           3783373-3783521,3783886-3784039,3784110-3784205,
           3784290-3784379,3784856-3785014,3785150-3785371,
           3785552-3785668,3785753-3785824,3786768-3786836,
           3786947-3787051,3787248-3787562,3787814-3788809
          Length = 947

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 82  HPAHQPSQWKQQLCWY 129
           HP H+  Q +QQL WY
Sbjct: 711 HPLHKSDQSEQQLSWY 726


>12_02_0814 -
           23410278-23411854,23411933-23412166,23412688-23412725,
           23412872-23412948
          Length = 641

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 161 RSFRSRQPRPKYQQSCCFHWLG 96
           ++F+  +  P++ Q CCF+ LG
Sbjct: 116 QAFKKARTVPRWLQGCCFNCLG 137


>02_04_0381 - 22497519-22497769,22498157-22498247
          Length = 113

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 122 QSCCFHWLG*CAGCC 78
           +SCC  W G C  CC
Sbjct: 97  KSCCDDWSGDCHKCC 111


>03_05_1164 - 30863063-30863095,30863308-30864777
          Length = 500

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 120 LLVLGPGLPASEGPPMLLR 176
           +L L P  P+SE PP+LLR
Sbjct: 206 VLCLWPPPPSSEKPPLLLR 224


>03_02_0564 -
           9477118-9477200,9477617-9477687,9477799-9477944,
           9478051-9478128,9478284-9478388,9478647-9478769,
           9479085-9479171,9479272-9479352,9479443-9479512,
           9479604-9479662,9479763-9479831,9479912-9479962,
           9480063-9480107,9480203-9480276,9480544-9480667,
           9480773-9480940
          Length = 477

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 176 PKQHRRSFRSRQPRP 132
           P  HR SFR+  PRP
Sbjct: 16  PHHHRSSFRTSSPRP 30


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,724,008
Number of Sequences: 37544
Number of extensions: 45830
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 14,793,348
effective HSP length: 38
effective length of database: 13,366,676
effective search space used: 267333520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)