Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7k12
         (178 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic int...    29   0.58 
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi...    29   0.58 
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi...    29   0.58 
Z81581-5|CAB04667.2|  646|Caenorhabditis elegans Hypothetical pr...    26   3.1  
U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical pr...    26   3.1  
U42436-6|AAM15564.1|  615|Caenorhabditis elegans Not-like (yeast...    25   9.4  
U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast...    25   9.4  

>X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 32  HNDVAIINHNHVGFTNNIQRINLASGSNN 118
           HN++A+ N   +  ++ +QRINL    NN
Sbjct: 203 HNEIALKNERSLNVSDLLQRINLLQTENN 231


>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
           filament, c protein2, isoform a protein.
          Length = 1128

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 32  HNDVAIINHNHVGFTNNIQRINLASGSNN 118
           HN++A+ N   +  ++ +QRINL    NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857


>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
           filament, c protein2, isoform b protein.
          Length = 1248

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 32  HNDVAIINHNHVGFTNNIQRINLASGSNN 118
           HN++A+ N   +  ++ +QRINL    NN
Sbjct: 829 HNEIALKNERSLNVSDLLQRINLLQTENN 857


>Z81581-5|CAB04667.2|  646|Caenorhabditis elegans Hypothetical
           protein T02E1.3a protein.
          Length = 646

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
 Frame = -3

Query: 140 PRPKYQQSCCFHW--LG*CA--GCCW 75
           P+PK+Q   C HW   G C+    CW
Sbjct: 33  PKPKFQTKICDHWRRSGSCSYGDACW 58


>U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical
           protein F25E2.2 protein.
          Length = 624

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 67  WLHQQHPAHQPSQWKQQLCWYLGLGCRLRKDLRC 168
           +L +Q PAHQ  Q K+Q C      C      +C
Sbjct: 530 FLEEQEPAHQKEQNKEQDCPINSKSCEKCSHSKC 563


>U42436-6|AAM15564.1|  615|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 4, isoform b protein.
          Length = 615

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 76  QQHPAHQPSQWKQQLCWYLGLGCRLRKDL 162
           QQH A Q +Q  QQ   Y G+   +  D+
Sbjct: 469 QQHQAQQQAQQHQQQQMYAGINSYMYNDM 497


>U42436-5|AAF99894.2|  796|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 4, isoform a protein.
          Length = 796

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 76  QQHPAHQPSQWKQQLCWYLGLGCRLRKDL 162
           QQH A Q +Q  QQ   Y G+   +  D+
Sbjct: 650 QQHQAQQQAQQHQQQQMYAGINSYMYNDM 678


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,799
Number of Sequences: 27780
Number of extensions: 36752
Number of successful extensions: 195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 12,740,198
effective HSP length: 39
effective length of database: 11,656,778
effective search space used: 221478782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)