Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7k12
         (178 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   0.45 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   1.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   1.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   1.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    19   4.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    19   4.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    19   4.2  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    19   5.5  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    19   5.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          19   7.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      19   7.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   7.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   7.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    19   7.3  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 0.45
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 70  LHQQHPAHQPSQWKQQ 117
           +H QHP  QP Q + Q
Sbjct: 172 MHTQHPHMQPQQGQHQ 187


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 23  DTLHNDVAIINHNHVGFTNN 82
           +T+HN+    N+N+  + NN
Sbjct: 87  NTIHNNNYKYNYNNNNYNNN 106


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 23  DTLHNDVAIINHNHVGFTNN 82
           +T+HN+    N+N+  + NN
Sbjct: 87  NTIHNNNYKYNYNNNNYNNN 106


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 176  PKQHRRSFRSRQPRPKYQQ 120
            P+Q  +  + +QP+P+ QQ
Sbjct: 1517 PQQQSQQPQQQQPQPQQQQ 1535



 Score = 18.2 bits (35), Expect = 9.6
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -3

Query: 176  PKQHRRSFRSRQPRPKYQQ 120
            P+Q ++  + +QP+ + QQ
Sbjct: 1505 PQQQQQQQQQQQPQQQSQQ 1523


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 5/10 (50%), Positives = 6/10 (60%)
 Frame = -3

Query: 104 WLG*CAGCCW 75
           W G C+ C W
Sbjct: 357 WSGFCSQCIW 366


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 7/16 (43%), Positives = 7/16 (43%)
 Frame = -3

Query: 128 YQQSCCFHWLG*CAGC 81
           Y Q C   W    AGC
Sbjct: 17  YHQRCSRDWFRISAGC 32


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -3

Query: 176 PKQHRRSFRSRQPRPKYQQSCCFHW 102
           P+Q ++  + +Q + + QQ    HW
Sbjct: 440 PQQQQQQQQQQQQQQQQQQQQQQHW 464


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 5/15 (33%), Positives = 9/15 (60%)
 Frame = +1

Query: 82  HPAHQPSQWKQQLCW 126
           +P ++  QW + L W
Sbjct: 95  YPPNKLQQWNEDLNW 109


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 5/15 (33%), Positives = 9/15 (60%)
 Frame = +1

Query: 82  HPAHQPSQWKQQLCW 126
           +P ++  QW + L W
Sbjct: 110 YPPNKLQQWNEDLNW 124


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = +2

Query: 14  YYMDTLHNDVAIINH 58
           YY++ L ND+  +++
Sbjct: 269 YYLERLSNDMGEVSY 283


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = +2

Query: 14  YYMDTLHNDVAIINH 58
           YY++ L ND+  +++
Sbjct: 269 YYLERLSNDMGEVSY 283


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 6/22 (27%), Positives = 11/22 (50%)
 Frame = -2

Query: 93  MRWMLLVKPTWLWLMMATSLWR 28
           +RW L      +W+M    +W+
Sbjct: 205 IRWELAGTLAVVWIMCYFCIWK 226


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 6/22 (27%), Positives = 11/22 (50%)
 Frame = -2

Query: 93  MRWMLLVKPTWLWLMMATSLWR 28
           +RW L      +W+M    +W+
Sbjct: 258 IRWELAGTLAVVWIMCYFCIWK 279


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +2

Query: 53  NHNHVGFTNNIQRI 94
           +H H  F  ++QRI
Sbjct: 126 SHEHPWFKKSVQRI 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,373
Number of Sequences: 438
Number of extensions: 506
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 38
effective length of database: 129,699
effective search space used:  2593980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)