Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7k10
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...   283   2e-77
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    29   0.56 
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    28   1.3  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   1.7  
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac...    27   3.0  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    26   3.9  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    26   3.9  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    26   5.2  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    26   5.2  
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.9  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    25   6.9  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.9  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   6.9  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   6.9  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    25   6.9  
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    25   9.1  
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    25   9.1  
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    25   9.1  

>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score =  283 bits (693), Expect = 2e-77
 Identities = 122/180 (67%), Positives = 157/180 (87%)
 Frame = +3

Query: 93  FKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHDRLSRI 272
           FK I  +P    F+D++LS+TQRKTPTV+   +KISRIRGFY RKVK+TQ    ++L  I
Sbjct: 6   FKNITPIPDVNTFLDVVLSRTQRKTPTVIRSGFKISRIRGFYGRKVKFTQDTITEKLDSI 65

Query: 273 IQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQLNTARHLIDNVAKDYVRLLKYGDSLYR 452
           +QEFPKL+D+HPF+ADL+N+LYD+DH K+ L QL+TA+HL++NVA+DY+RLLKYGDSLYR
Sbjct: 66  LQEFPKLNDIHPFHADLLNILYDRDHLKIALSQLSTAKHLVENVARDYIRLLKYGDSLYR 125

Query: 453 CKQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFI 632
           CKQLKRAALGRMATI+KRQ ++L +LEQVRQHL+RLP+IDP TRT+++CG+PNVGKSSF+
Sbjct: 126 CKQLKRAALGRMATIIKRQKSSLEFLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFM 185


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = +3

Query: 48  DTKIALN*NKMSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRK 227
           +TK+ LN  ++S+  FKK   +  A D      +K   + P V+++H        F +  
Sbjct: 298 ETKVYLNNERISISGFKKYVEMYLASD------TKPDEEPPRVIYEHVNDRWDVAFAVSD 351

Query: 228 VKYTQQNFHDRLSRI 272
            ++ Q +F + +S I
Sbjct: 352 GQFKQVSFVNNISTI 366


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 456 KQLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIIICG 602
           K LKR  LG  AT +   GAN+        H    P  DP  +T+++ G
Sbjct: 53  KILKRTTLGLFATAVVLYGANVYRFRHPDPH---QPLPDPSKKTLVVLG 98


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 99   KIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGF 215
            KI VV   +  +  + S+ QRK  +++ KH  I  + GF
Sbjct: 1670 KIGVVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGF 1708


>SPCC132.02 |hst2||Sir2 family histone deacetylase
           Hst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 215 KPTYS*YFIMLVNDCRSFPLCFR*N 141
           +PTY+ YFI L++D R    C+  N
Sbjct: 95  RPTYTHYFIRLLHDKRLLQKCYTQN 119


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
 Frame = +3

Query: 75  KMSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIR-KVKYTQQNF 251
           K++   FK IA   +   F+D  +S   R   T   +  +++   GF     +K +   F
Sbjct: 547 KINTTTFKTIANNKSVDAFLDDCVSFFSRPEMT---QDSQLNASSGFLTNFSLKDSTDRF 603

Query: 252 HDRLS--RIIQEFPKLDDVHPFYADLMNVL 335
           +  LS  ++ + F K+DD +  Y+D+ + L
Sbjct: 604 YKVLSYEKVSERFVKIDDSYITYSDIFSPL 633


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 23/70 (32%), Positives = 34/70 (48%)
 Frame = +3

Query: 195 ISRIRGFYIRKVKYTQQNFHDRLSRIIQEFPKLDDVHPFYADLMNVLYDKDHYKLGLGQL 374
           +S IR    R+ K    +    LSR I +  KLD V PF   +M +L D+ +  + +  L
Sbjct: 437 LSTIRHVNTRESKINALSLVQILSRNICDESKLDTVLPF---VMTLLRDQ-YADVRISAL 492

Query: 375 NTARHLIDNV 404
            T   L+ NV
Sbjct: 493 ITITRLVSNV 502


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 528 LEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFI 632
           L Q+ +  A L S D    ++ + GFPN GKSS I
Sbjct: 294 LIQILRQFASLHS-DKKQISVGLIGFPNAGKSSII 327


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 585 TIIICGFPNVGKSSFI 632
           T+ + G+PNVGKSS I
Sbjct: 271 TVGVIGYPNVGKSSVI 286


>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -2

Query: 620 FSDIWESTDDYRPGV 576
           FS++W+S+ D+ PG+
Sbjct: 297 FSEVWKSSYDFSPGI 311


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -2

Query: 620 FSDIWESTDDYRPGV 576
           FS++W+S+ D+ PG+
Sbjct: 297 FSEVWKSSYDFSPGI 311


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -2

Query: 620 FSDIWESTDDYRPGV 576
           FS++W+S+ D+ PG+
Sbjct: 297 FSEVWKSSYDFSPGI 311


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 459 QLKRAALGRMATIMKRQGANLTYLEQVRQHLARLPSIDPYTRTIII 596
           Q+  A LGR+  +++  G N+    +  +  A L   DP+T TI +
Sbjct: 773 QVVPAPLGRVPVLLR--GGNILITRERIRRAAELTRNDPFTLTIAV 816


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 98  KDCCSPYS*GLYRHNFIEN 154
           K   SPYS G Y++N IEN
Sbjct: 501 KSSSSPYSRGPYKYNRIEN 519


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 524 IPGTGPSTFSTFTIDRSLHQDDNH 595
           IP    S   T T+DRSL  D NH
Sbjct: 328 IPIQSTSDNHTVTVDRSLSNDGNH 351


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 417 VRLLKYGDSLYRCKQLKRAALGRMATIMKRQG 512
           +R + Y D+L+  K L    LG+  T ++R+G
Sbjct: 421 LRHIDYDDTLHSAKSLFYEILGQNNTFLQREG 452


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 180 HKHYKISRIRGFYIRKVKYTQQNFHDRLSRI 272
           H+H+K+SR R  YI+       N  D +++I
Sbjct: 230 HQHWKVSRDRKQYIKNFHNESVNNVDLINKI 260


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 513 ANLTYLEQVRQHLARLPSIDPYTRTIIICGFPNVGKSSFI 632
           A L  LE + +  A          T  + G+PNVGKSS I
Sbjct: 279 ATLKVLEGIFEKFASTLPDGKTKMTFGLVGYPNVGKSSTI 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,121
Number of Sequences: 5004
Number of extensions: 55727
Number of successful extensions: 172
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)