Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7k09
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...   120   1e-28
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    26   2.7  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score =  120 bits (288), Expect = 1e-28
 Identities = 55/99 (55%), Positives = 79/99 (79%)
 Frame = +1

Query: 1   SHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYX 180
           S +RRVLMS+PLSKELR+++ ++S+P+R+DD++ V+RG  KG++ GK+  VYRKKF++  
Sbjct: 23  SSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRGSNKGRE-GKITSVYRKKFLLLI 81

Query: 181 ERIQREKANGATAYVGIHPSKCVIVKLXMNKDRXAILDR 297
           ER+ REKANGA+A VGI  SK VI KL ++KDR  ++ R
Sbjct: 82  ERVTREKANGASAPVGIDASKVVITKLHLDKDRKDLIVR 120


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 104 LYVDTTKANRLAK*CRCIVKSLLYTLRGF 190
           LY D  +    A+ C C+V++LLY  R F
Sbjct: 78  LYHDNHERKMSAQSCACMVRTLLYGKRFF 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,579,421
Number of Sequences: 5004
Number of extensions: 29711
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)