Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7k09
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical pr...   133   4e-32
Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical p...   106   7e-24
Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical pr...   106   7e-24
U23513-3|AAB36862.1|  209|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical ...    27   5.5  
AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormo...    26   9.5  

>Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical
           protein F28C6.7a protein.
          Length = 142

 Score =  133 bits (322), Expect = 4e-32
 Identities = 61/115 (53%), Positives = 86/115 (74%)
 Frame = +1

Query: 1   SHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYX 180
           SH RR +MS+PL+KELR K  ++++PIR DDEV V+RG +KG   G+V++ YRKKFV++ 
Sbjct: 23  SHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRGRHKGN-TGRVLRCYRKKFVIHI 81

Query: 181 ERIQREKANGATAYVGIHPSKCVIVKLXMNKDRXAILDRXAKGXLAALGXXKGKY 345
           ++I REKANG+T ++GIHPSK  I KL ++KDR A+++R A G     G  KGK+
Sbjct: 82  DKITREKANGSTVHIGIHPSKVAITKLKLDKDRRALVERKAAGRSRVTGILKGKH 136


>Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical
           protein F28C6.7c protein.
          Length = 109

 Score =  106 bits (254), Expect = 7e-24
 Identities = 47/81 (58%), Positives = 66/81 (81%)
 Frame = +1

Query: 1   SHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYX 180
           SH RR +MS+PL+KELR K  ++++PIR DDEV V+RG +KG   G+V++ YRKKFV++ 
Sbjct: 23  SHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRGRHKGN-TGRVLRCYRKKFVIHI 81

Query: 181 ERIQREKANGATAYVGIHPSK 243
           ++I REKANG+T ++GIHPSK
Sbjct: 82  DKITREKANGSTVHIGIHPSK 102


>Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical
           protein F28C6.7b protein.
          Length = 106

 Score =  106 bits (254), Expect = 7e-24
 Identities = 47/81 (58%), Positives = 66/81 (81%)
 Frame = +1

Query: 1   SHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYX 180
           SH RR +MS+PL+KELR K  ++++PIR DDEV V+RG +KG   G+V++ YRKKFV++ 
Sbjct: 23  SHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRGRHKGN-TGRVLRCYRKKFVIHI 81

Query: 181 ERIQREKANGATAYVGIHPSK 243
           ++I REKANG+T ++GIHPSK
Sbjct: 82  DKITREKANGSTVHIGIHPSK 102


>U23513-3|AAB36862.1|  209|Caenorhabditis elegans Hypothetical
           protein D2021.8 protein.
          Length = 209

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = -1

Query: 135 NLL--AFVVSTYNLNFIVFANRHGFYIEFLS*FLRQG 31
           NLL  A VV ++NL+ ++ A +HG ++E +   L+QG
Sbjct: 11  NLLKPAVVVDSFNLHAVISATQHG-HVESVEAALKQG 46


>AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical
           protein Y106G6H.5 protein.
          Length = 855

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 232 ECRHMLLHHWPFLFESSQXIQQTFYDTPASLCQPVGLC 119
           +C+  +L  WPFL   ++ +Q   +        PV LC
Sbjct: 137 DCQSEMLERWPFL--QTEDVQLALFSPEDVALDPVALC 172


>AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 119 protein.
          Length = 388

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 415 FKNFIYXKNYLFKRPPWLWQFPRCI 341
           F NF++ KN+L  +     +F +CI
Sbjct: 79  FSNFLFLKNFLIPKTSRFCRFKKCI 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,918,575
Number of Sequences: 27780
Number of extensions: 177739
Number of successful extensions: 423
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)