Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7k09
         (417 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   0.60 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   2.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   2.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   4.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   4.2  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   5.6  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   5.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.4  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 0.60
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 247 HTLKGECRHMLLHHWPFLFESS 182
           HT + +C H LL H P L + S
Sbjct: 330 HTPEPDCIHELLGHMPLLADPS 351


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 210 CNSICRHSPFKVCDCQV 260
           C ++C    F  CDC++
Sbjct: 743 CFALCHCCDFDACDCEM 759


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 108 YNLNFIVFANRHGFYI 61
           YN +FI++++   FYI
Sbjct: 339 YNTDFIIYSSLSSFYI 354


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +1

Query: 229 IHPSKCVIVKLXMNKDRXAILDRXAKG 309
           +HPS+C   K+   +    +LD    G
Sbjct: 16  LHPSRCTQGKVNYREKEKEVLDNILGG 42


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +1

Query: 229 IHPSKCVIVKLXMNKDRXAILDRXAKG 309
           +HPS+C   K+   +    +LD    G
Sbjct: 16  LHPSRCTQGKVNYREKEKEVLDNILGG 42


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 361 WQFPRCIY 338
           WQF +CIY
Sbjct: 129 WQFGKCIY 136


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 361 WQFPRCIY 338
           WQF +CIY
Sbjct: 103 WQFGKCIY 110


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 361 WQFPRCIYPCXCQVQP 314
           W+ PR ++P   +V+P
Sbjct: 574 WEPPRALWPTEWKVRP 589


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,480
Number of Sequences: 438
Number of extensions: 2020
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)