Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7k06
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    62   5e-11
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    36   0.005
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    32   0.061
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    29   0.57 
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    28   1.00 
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    27   2.3  
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple...    27   3.0  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   5.3  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   7.0  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   9.3  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 62.5 bits (145), Expect = 5e-11
 Identities = 37/119 (31%), Positives = 53/119 (44%)
 Frame = +1

Query: 220 VVLVDGVRTPFLVSFTDYARMMPHELARHALLGLLQKTGISKDVIDYIVYGTVIQEVKTS 399
           V +V  VRTP       +A +   +L   A+ G L++  I    +D +  G V+      
Sbjct: 6   VYIVSAVRTPMGSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMGNVVSANLGQ 65

Query: 400 NIGREAALAAGFSDRTPAHTVTMACISSNQAITTGIGMIAAGAYDVIVAGGVEFMSDVP 576
           N  R+ AL AG        TV   C S  +A   G   I  G  +++VAGG E MS+ P
Sbjct: 66  NPARQCALGAGLPRSIVCTTVNKVCASGMKATILGAQTIMTGNAEIVVAGGTESMSNAP 124


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 454 HTVTMACISSNQAITTGIGMIAAGAYDVIVAGGVE-FMSDVPIRHSRKMRSLLLRIN 621
           HT T AC +   AI      I  G  DVI+AGG E  ++ + +    K RSL  + N
Sbjct: 164 HTTTTACAAGCHAIGDAFNFIKLGHADVIIAGGSESCINPLTVAGFSKARSLSTKFN 220


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 32.3 bits (70), Expect = 0.061
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = +1

Query: 94  AKSLIKANHVRSTVKFDTARRALSVAPV---LQQKKSLPDRTGKNVVLVDGVRTPFLVSF 264
           +K+L+  +H+  TVK DT RR + V+ V   L Q     D + K+  L  G+   F  + 
Sbjct: 92  SKALLNNSHIYHTVKHDTKRRGIDVSGVSVNLSQMMKAKDDSVKS--LTSGIEYLFKKNK 149

Query: 265 TDYAR 279
            +YA+
Sbjct: 150 VEYAK 154


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
 Frame = -1

Query: 251 NGVRTPSTRTTFLPVR--SGRDFFCCSTGATLSARRAVSNLTVDRT 120
           NGVR+P++  T  P+R  SG  +   S+ +  SA+R+VS  +++ T
Sbjct: 475 NGVRSPTSSPTGSPIRRTSGNRWSSGSSHSKKSAQRSVSMSSLNNT 520


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +3

Query: 339 IEGCH*LHCIWHRDPRGENLKYRARGS 419
           +E CH LH I HRD + ENL   A GS
Sbjct: 121 LEYCHKLH-ICHRDLKPENLYLDAHGS 146


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
 Frame = +1

Query: 319 LLQKTGISKDVIDYIVYGTVIQE-----VKTSNIGREAALAAGFSDRTP--AHTVTMACI 477
           LL K  +S        Y TV  E     + T+   +EAA AAG ++ T   A +VT A  
Sbjct: 27  LLNKRDVSVVTSKVYAYTTVTLEAAASAISTNGAAKEAATAAGDAETTSSVAASVTPAAS 86

Query: 478 SSNQAITTGIGMIAAGA 528
           SS  A  T +   +  A
Sbjct: 87  SSVAASVTPVASSSVAA 103


>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
           subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 313

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 361 CSQ*HPSIYQSFVGDQE 311
           C Q HP IYQ  VG+ E
Sbjct: 243 CFQKHPEIYQDMVGESE 259


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
 Frame = +1

Query: 316  GLLQKTGISKDV-IDYIVYGTVIQE--VKTSNIGREAALAAGFSDRTPAHTVTMACISSN 486
            G+    G+ KD   D  V   ++QE  + T+N      L    S   P  T   AC ++ 
Sbjct: 1210 GMSALRGMYKDRWTDKPVQKDILQESFINTANAWINMLL---LSASGPIKTPVGACATAV 1266

Query: 487  QAITTGIGMIAAGAYDVIVAGGVEFMSD 570
            +++   + +I +G   + ++GG +  S+
Sbjct: 1267 ESVDAAVDLITSGKARICISGGYDDFSE 1294


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/55 (21%), Positives = 25/55 (45%)
 Frame = +1

Query: 352 IDYIVYGTVIQEVKTSNIGREAALAAGFSDRTPAHTVTMACISSNQAITTGIGMI 516
           +D +V  +++   KTS +   A+    ++       V   CIS+N  +   +G +
Sbjct: 589 VDVMVAASIVHHAKTSLMHSAASSTPSYNGERIVPDVPSPCISTNPNLPALVGSL 643


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 178 LQQKKSLPDRTGKNVVLVDGVRTPFLVSFTDYARMMPH 291
           +Q KK L +   KNV L+  +   F V F++Y  + PH
Sbjct: 378 MQYKKEL-EVGFKNVQLLQSLADIFSVLFSEYFMIFPH 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,666,225
Number of Sequences: 5004
Number of extensions: 55987
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)