Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7k06
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M77697-2|AAA27897.2|  448|Caenorhabditis elegans Hypothetical pr...   168   3e-42
U41105-4|AAA82397.2|  407|Caenorhabditis elegans 3-ketoacyl-coa ...    55   5e-08
Z81546-11|CAB04455.2|  394|Caenorhabditis elegans Hypothetical p...    53   2e-07
AF098999-6|AAC68724.2|  787|Caenorhabditis elegans Half transpor...    29   3.7  
D86473-1|BAA20377.1|  412|Caenorhabditis elegans 3-keto-acyl-CoA...    28   4.9  
AL023847-7|CAA19548.1|  412|Caenorhabditis elegans Hypothetical ...    28   4.9  
AL031624-2|CAA20942.1|  244|Caenorhabditis elegans Hypothetical ...    28   6.5  
Z99277-2|CAB16487.1|  557|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca...    27   8.6  

>M77697-2|AAA27897.2|  448|Caenorhabditis elegans Hypothetical
           protein B0303.3 protein.
          Length = 448

 Score =  168 bits (408), Expect = 3e-42
 Identities = 88/167 (52%), Positives = 119/167 (71%)
 Frame = +1

Query: 130 TVKFDTARRALSVAPVLQQKKSLPDRTGKNVVLVDGVRTPFLVSFTDYARMMPHELARHA 309
           +  F TAR A +VA     KK++P     N+VLVD VRTPF+VS T +  +M  +L + A
Sbjct: 6   STSFGTARAASAVA-----KKNMP-----NIVLVDAVRTPFVVSGTVFKDLMAVDLQKEA 55

Query: 310 LLGLLQKTGISKDVIDYIVYGTVIQEVKTSNIGREAALAAGFSDRTPAHTVTMACISSNQ 489
           +  L++KT +  + +D+I+ GTVIQE KTSNI REAAL AG  D+ PAHTVT+ACISSN 
Sbjct: 56  IKALVEKTKLPYEQLDHIICGTVIQECKTSNIAREAALLAGVPDKIPAHTVTLACISSNV 115

Query: 490 AITTGIGMIAAGAYDVIVAGGVEFMSDVPIRHSRKMRSLLLRINRAK 630
           A+TTG+GM+A G  + I+AGGVE +SDVPIR++R  R  +L +N+AK
Sbjct: 116 AMTTGMGMLATGNANAIIAGGVELLSDVPIRYNRNARKAMLGMNKAK 162


>U41105-4|AAA82397.2|  407|Caenorhabditis elegans 3-ketoacyl-coa
           thiolase protein 1 protein.
          Length = 407

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 36/123 (29%), Positives = 51/123 (41%)
 Frame = +1

Query: 208 TGKNVVLVDGVRTPFLVSFTDYARMMPHELARHALLGLLQKTGISKDVIDYIVYGTVIQE 387
           + K+  +V   RTP     +  + +   ELA  A+   L++  +    I  +  G V Q 
Sbjct: 20  SNKHAFIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEVFLGQVCQA 79

Query: 388 VKTSNIGREAALAAGFSDRTPAHTVTMACISSNQAITTGIGMIAAGAYDVIVAGGVEFMS 567
                  R+AAL AG        TV   C S  +AI      I  G  D  + GG+E MS
Sbjct: 80  NAGQAPARQAALGAGLDLSVAVTTVNKVCSSGLKAIILAAQQIQTGHQDFAIGGGMESMS 139

Query: 568 DVP 576
            VP
Sbjct: 140 QVP 142


>Z81546-11|CAB04455.2|  394|Caenorhabditis elegans Hypothetical
           protein F53A2.7 protein.
          Length = 394

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 1/123 (0%)
 Frame = +1

Query: 211 GKNVVLVDGVRTPFLVSFTDYARMMPHELARHALLGLLQKTGISKDVIDYIVYGTVIQEV 390
           GK V +V   RT F         +   +L   A    L+   +  D +D++++G V+   
Sbjct: 3   GKCVFIVGAKRTAFGTFGGKLKGLSATDLGVVASQAALKHANVGADAVDHVIFGNVVASS 62

Query: 391 KTS-NIGREAALAAGFSDRTPAHTVTMACISSNQAITTGIGMIAAGAYDVIVAGGVEFMS 567
           +    + R   L +G      A TV   C S  QA+      I  G  ++++AGG E MS
Sbjct: 63  RDGIYLSRHIGLKSGVPQNVGALTVNRLCGSGFQAVVNAAQAIKLGESNIVLAGGTENMS 122

Query: 568 DVP 576
            VP
Sbjct: 123 MVP 125


>AF098999-6|AAC68724.2|  787|Caenorhabditis elegans Half transporter
           (pgp related)protein 4 protein.
          Length = 787

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 211 GKNVVLVDGVRTPFLVSFTDYARMMPHELAR--HALLGLLQKTGISKDVIDYI 363
           G ++VL   ++   LVSF  Y   +   L +      GL+Q  G S+ V +YI
Sbjct: 425 GGHLVLTQKMKGDLLVSFLLYQMQLGDNLRQMGEVWTGLMQSVGASRKVFEYI 477


>D86473-1|BAA20377.1|  412|Caenorhabditis elegans 3-keto-acyl-CoA
           thiolase protein.
          Length = 412

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +1

Query: 406 GREAALAAGFSDRTPAHTVTMACISSNQAITTGIGMIAAGAYDVIVAGGVEFMS 567
           G+ A    G +   P   V  AC S +  +  G  +I +G  DV++  G E M+
Sbjct: 66  GQRALYEVGLTG-IPIFNVNNACASGSSGLFLGKQIIESGNSDVVLCAGFERMA 118


>AL023847-7|CAA19548.1|  412|Caenorhabditis elegans Hypothetical
           protein Y57A10C.6 protein.
          Length = 412

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +1

Query: 406 GREAALAAGFSDRTPAHTVTMACISSNQAITTGIGMIAAGAYDVIVAGGVEFMS 567
           G+ A    G +   P   V  AC S +  +  G  +I +G  DV++  G E M+
Sbjct: 66  GQRALYEVGLTG-IPIFNVNNACASGSSGLFLGKQIIESGNSDVVLCAGFERMA 118


>AL031624-2|CAA20942.1|  244|Caenorhabditis elegans Hypothetical
           protein H16D19.3 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/31 (29%), Positives = 22/31 (70%)
 Frame = +1

Query: 7   RVQLSKFFQNLHCLKKNCPKCRAKMASQVAK 99
           R+Q+++F +    L++ CPKC   ++S++++
Sbjct: 12  RMQMTQFEEKRFELRETCPKCHQILSSELSR 42


>Z99277-2|CAB16487.1|  557|Caenorhabditis elegans Hypothetical
           protein Y53C12A.3 protein.
          Length = 557

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 1   EVRVQLSKFFQNLHCLKKNCPKCRA 75
           E +VQLS F    +C+K  CP C++
Sbjct: 328 EHQVQLSSFDPIENCVKSTCPGCKS 352


>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
            protein 4 protein.
          Length = 2325

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -3

Query: 537  DVIRAGRYHTDTSG---DCLVRRDASHGDSVRWSPVAEPSRQGCLAPY 403
            D ++A  Y +  SG   + +V  + S    ++W+PVAE S  G +  Y
Sbjct: 1245 DSVKARTYESVPSGSPRNIVVTAEGSKAAIIKWNPVAELSTNGDVIGY 1292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,041,695
Number of Sequences: 27780
Number of extensions: 328055
Number of successful extensions: 1018
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)