Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7k06
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   4.4  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   5.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.7  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 250 MECGLHRQGPHSCLYGLGEISSAAVLVLHS 161
           +E GL ++GP    YG G +S+   L LH+
Sbjct: 382 VEFGLCKEGPDVKAYGAGLLSAYGEL-LHA 410


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 499 TGIGMIAAGAYDVIVAGGVEFMSDVPIRHSRKMRSLLLRINRAKTPA 639
           T IG+     +D    GG+E +S +  +      S+L+  N A   A
Sbjct: 113 TAIGLSLIKGFDKKQGGGIELISHIISKQLHIPVSVLMGANLASEVA 159


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 89  KSLNH*LKQTTYDLLLSSILLDER 160
           +S+NH L    YD  LS   +DE+
Sbjct: 759 RSVNHLLTHHEYDYELSRGYIDEK 782


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,669
Number of Sequences: 438
Number of extensions: 3662
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)